Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq50522 214 4e-51 seq53833 185 2e-42 seq50588 185 2e-42 seq6665 93.3 9e-15 >seq50522 Length=209 Score = 214 bits (236), Expect = 4e-51 Identities = 172/208 (83%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 1941 GCGTCCCGGATCGAGCCAAAGCCGCCGCTGTTCTGGGGCACGATGCCCAGCAGCTGCGGC 2000 || ||||| |||||||| ||||| ||| ||||| ||||||||||||||||||||||| Sbjct 208 GCATCCCGAATCGAGCCGAAGCCACCGGCATTCTGCGGCACGATGCCCAGCAGCTGCGGG 149 Query 2001 GGTACCCGTAACGCGGCCAGCATGTCATCGCGGGTCACGCTCTTGATGCCGGTGAATTCA 2060 |||| || | ||||||||| |||||||| || ||||| | ||||||||||||||| ||| Sbjct 148 GGTATGCGCAGCGCGGCCAGAATGTCATCACGAGTCACACGCTTGATGCCGGTGAACTCA 89 Query 2061 TCCCTTGCCGCCACCTCACTGACCGGGATCACCTGCAGGCCGTCCTTCTTCCCGTTGGGC 2120 ||| | |||||||| || |||| |||||||| ||||| || |||||||| || |||||| Sbjct 88 TCCTTGGCCGCCACTTCGCTGATCGGGATCAGCTGCAATCCATCCTTCTTGCCATTGGGC 29 Query 2121 GAGTGAACGAACAGGTTCTTGAAATTGC 2148 || || | ||||||||| |||||||| Sbjct 28 GAATGCATGAACAGGTTGCGGAAATTGC 1 >seq53833 Length=229 Score = 185 bits (204), Expect = 2e-42 Identities = 167/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26987 TGCTTTGGCACACACGGGATCGTGGCCCTCACATTCTGGTTCGGCTCGCTGTACGCCAAT 27046 ||||| ||| | || || |||| ||||| | ||||||||||| || |||| |||| | Sbjct 210 TGCTTCGGCGCCCAGGGTGTCGTTGCCCTGATCTTCTGGTTCGGTTCACTGTTCGCCGAG 151 Query 27047 CAGATCCGTAGCAGTCACAAGTCGTTCCCGTTCTTGGAAGCCACGGGCGAGGCCGGCGCC 27106 |||||||| || | || | ||||| |||||| |||| ||||| ||||||||||||||| Sbjct 150 CAGATCCGCAGTCGCTACCAATCGTTTCCGTTCCTGGAGGCCACCGGCGAGGCCGGCGCC 91 Query 27107 GGCAAGACCACGCTGCTCAACTTCCTATGGAAGCTGCTCGCCCGCGCCGATCATGAAGGC 27166 ||||||||||| |||||||| | ||||||| ||||||| ||| |||| | | |||||| Sbjct 90 GGCAAGACCACCGTGCTCAACCTGTTATGGAAACTGCTCGGCCGGGCCGGTTACGAAGGC 31 Query 27167 TTTGACCCCGCCAAGTCCACGAAGGCCGGC 27196 || || || ||||||| || ||||||||| Sbjct 30 TTCGATCCGTCCAAGTCGACCAAGGCCGGC 1 >seq50588 Length=314 Score = 185 bits (204), Expect = 2e-42 Identities = 161/200 (81%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 2129 GAACAGGTTCTTGAAATTGCCCGGCCCGCGCGACTGCCGCAGTGCGTCGCGTAACGCATC 2188 ||||||||| ||||||||||||||| ||||| | |||||| || || || || || || Sbjct 310 GAACAGGTTGCGGAAATTGCCCGGCCCACGCGAGTCCCGCAGCGCTTCACGCAAGGCGTC 251 Query 2189 CACGTCCATGCCCTCGGGTTGGGGATCGGTCATGTAGAGGATGTAGCCGGCGTGCGAACC 2248 ||||||||||||||| || || |||||||||||||||||||| | ||||| ||||| || Sbjct 250 CACGTCCATGCCCTCCGGCTGCGGATCGGTCATGTAGAGGATAAACCCGGCATGCGAGCC 191 Query 2249 GTTGTTGTAATACTTCCGGCGGAAAAGCGTGGCCGACTCATTCAGCAACGCGGCCTGTAC 2308 |||| |||| ||| | |||||||| | ||||||||| || || |||| ||| | ||| || Sbjct 190 GTTGGTGTAGTACCTGCGGCGGAACAACGTGGCCGATTCGTTGAGCAGCGCCGACTGCAC 131 Query 2309 GGCTGGCATCCATTCCGGCA 2328 | | || ||| ||||||| Sbjct 130 AACGGCCAGCCACTCCGGCA 111 >seq6665 Length=223 Score = 93.3 bits (102), Expect = 9e-15 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 11295 CTACGAGAGCGATTCCGATTTCCGGCGCCGCATCCAGCTCGCGCCGGAGGGCCTGTCGGT 11354 |||||| || || |||||||| |||||||||||||| | |||||| ||| | || Sbjct 166 CTACGAAAGTGACGAGGATTTCCGACGCCGCATCCAGCTGGGGCCGGAAGGCTTCAGTGT 107 Query 11355 TGCCGGCCCCGAAGGGGCCTACATCTTCCACACCCTGTCGGCCGACGTGGCGGTACTCGA 11414 || || || || || ||||||||||||||| | ||| ||||||| || || || Sbjct 106 GGCTGGGCCGGAGGGTGCCTACATCTTCCACGCGCTGAGCGCCGACGCCCGTGTGCTGGA 47 Query 11415 CGCCAGCGTGGCCAGCCCTTCGCCCGGTGAAGTCGTGGT 11453 |||||||| |||| || || || || || || ||||| Sbjct 46 CGCCAGCGCAACCAGTCCCTCCCCTGGCGAGGTAGTGGT 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104514258510094