Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq856519 116 3e-20
seq70678 102 6e-16
seq146241 96.9 3e-14
seq12001 96.9 3e-14
>seq856519
Length=10792
Score = 116 bits (128), Expect = 3e-20
Identities = 532/831 (64%), Gaps = 32/831 (4%)
Strand=Plus/Plus
Query 281662 GGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 281721
|||||| | || || || || || | ||||||||| || || |||||||||| ||||
Sbjct 7602 GGTCATGACTCCTCCGGCAGTCTCAAGACCAAGAGACAGTGGGGTGACATCAAGGAGGAG 7661
Query 281722 AATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 281781
|| | || | || || | | ||| || || || || || | ||||||||
Sbjct 7662 AAGGTCCTGCACCTTCTCGTTCCCCTCACCGCTGAGGATTGCAGCCTGGACGGCAGCACC 7721
Query 281782 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 281839
||| ||||||||||||||||| |||| | || || || | || || ||||| ||
Sbjct 7722 ATAGGCAACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGCTCCTTCCCGTTGAAGAAG 7779
Query 281840 TTTGAAAGAAGTTGTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTC 281898
| || || || || | || | ||||| | | || || || || | |||| ||
Sbjct 7780 TCCTGCAGCAGCTG-CTGAACTCTGGGAATTCTGGTGGAACCACCGACAAGGACAACATC 7838
Query 281899 ATGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAA-ACTTTTTCAACGGGTTCAAGA 281956
||| | ||| | || |||| || | |||| | | |||| | || || | || |
Sbjct 7839 ATGGATG-GTGCTCTTGTCCATCTTGGCATCCCTCAGACACTTCTCCACAGGCTCCATGC 7897
Query 281957 CCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA 282016
| | || || | ||| || || || || | || || || | ||| ||
Sbjct 7898 ACTTC-CTGAAGAGGTCCATGTTGAGCTCCTCAAACCTGGCCCTGGTGATGGTGGAATAG 7956
Query 282017 TAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGT 282076
|||||| ||| || || | ||||| | || || || ||||| | | ||||| ||
Sbjct 7957 AAATCAACTCCCTCAAAGAGTGAATCGATCTCGATGGTGGTTTGGGCAGTGGAAGAAAGG 8016
Query 282077 GCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG--CT----TTT--GCTG 282128
| | || || | ||||||| ||||| || || | || | || ||| ||||
Sbjct 8017 GTCCTCTTCGCCCTCTCACATGAAGTCCTGAGCCTCCTCAAAGACCTGGGGTTTCCGCTG 8076
Query 282129 ATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGAC 282188
|| ||| | || | || |||||||| |||| ||| | | || | ||
Sbjct 8077 AT--------ATCCTTCTTGTGCTTCCTCTTGAACTCTTGGACAAAGTGGTTCACCATAC 8128
Query 282189 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 282248
| || ||||| || || || || | | ||| | || | || || | || | || |
Sbjct 8129 GGTTGTCAAAGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTGGCCTTCACCTCAAAGA 8188
Query 282249 GTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAA 282308
|| || |||| || | |||| |||||| || || ||||| | ||||| ||||
Sbjct 8189 TACCCTCCTCAATAGTGAGGAGAGAGACATCAAAAGTGCCGCCACCGAGGTCAAAGATAA 8248
Query 282309 GTACATTCATTTCTTTGTCT-TGGT-----TTTTATCAAGACCATACGCAAAAGCAGCAG 282362
| |||||| | || | | |||| | || ||||||||||| |||| ||||| |
Sbjct 8249 GCACATTCTTCTCACCGACACTGGTAGCCTTCTTGTCAAGACCATAGGCAATTGCAGCTG 8308
Query 282363 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 282422
| ||||| || || || || | || ||||||||||||||||| || ||||| || |
Sbjct 8309 CTGTTGGCTCGTTGATGATACGCATCACATTAAGACCAGCAATAACACCAGCATCCTTGG 8368
Query 282423 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473
| || || || || ||||| || || || ||||| ||||| | ||||||||
Sbjct 8369 TTGCCTGCCTCTGGGAATCATTGAAGTAAGCAGGCACAGTGACAACGGCAT 8419
>seq70678
Length=6846
Score = 102 bits (112), Expect = 6e-16
Identities = 145/203 (71%), Gaps = 6/203 (3%)
Strand=Plus/Minus
Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334
|||||| || || ||||||| ||||||| || | || |||| |||| || |
Sbjct 4815 ACATCAAAAGTACCGCCACCCAAGTCAAAAACTAGAA---TCGTTTCGTTGTTTT---TC 4762
Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394
|| |||| |||||| |||| || ||||||||||| ||||| ||||| | | ||| |
Sbjct 4761 TTCTCAAAACCATAAGCAAGAGATGCAGCAGTTGGCTCATTTATAATGCGGAGAACTTCC 4702
Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454
|| || ||||| | || ||||| || || ||| ||| ||||| || || || || ||
Sbjct 4701 AGTCCTGCAATACGGCCAGCATCCTTTGTTGCTGTTCTCTGTGAGTCATTGAAGTACGCC 4642
Query 282455 GGAACAGTAATAACGGCATCTGT 282477
|||||||||| || || | |||
Sbjct 4641 GGAACAGTAACCACCGCTTTTGT 4619
>seq146241
Length=3333
Score = 96.9 bits (106), Expect = 3e-14
Identities = 526/826 (64%), Gaps = 24/826 (3%)
Strand=Plus/Minus
Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722
||||| | ||| || ||||| || | |||||| ||||||||||||||||| | || |
Sbjct 3318 GTCATCACACCCCCGGCTGTCTCCAGACCAAGGGAAAGAGGAGTGACATCCAACAGCAGC 3259
Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 281781
| | || | || || | | || ||||| | || || || | |||||| ||
Sbjct 3258 AGGTCCTGGACCTTCTCGTTGCCCTCTCCGCTCAAGA-TGGCAGCCTGGACAGCAGCTCC 3200
Query 281782 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 281839
|| |||||||| |||||||| || | | || ||| || | || || ||||| ||
Sbjct 3199 GTAGGCAACAGCCTCATCAGGGTTGATGCTCTTGCAT--AGCTCCTTGCCGTTGAAGAAG 3142
Query 281840 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899
| ||||| || || ||||||| | || || |||||||| | |||| |||
Sbjct 3141 TCCTGCAGAAGCTGCTGCACTCTAGGAATCCTAGTGGAACCTCCAACAAGGACAACATCA 3082
Query 281900 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 281958
||||| ||| | || |||| |||| |||| | | || || || || || | ||
Sbjct 3081 TGCACG-GTGCTCTTGTCCATCTTTGCATCCCTCAGACACTTCTCCACAGGCTCCATACA 3023
Query 281959 AGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA 282016
|| || | || || || || || || || | || | ||| | ||
Sbjct 3022 CTTCCTGAAGAGATCCATGTTCATC--TCCTCAAACCGGGCACGGGTGATGGTGG-AGTA 2966
Query 282017 TAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075
|| || || || || |||| || |||| || || || || || | | || || ||
Sbjct 2965 GAAGTCTATGCCCTCAAACAGCGAGTCAATCTCGATGGTGGTCTGGGCAGTGGAGGAGAG 2906
Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--A 282133
| | ||| || | ||||| | |||||| || || || | ||| ||| | ||| |
Sbjct 2905 AGTTCTTTTTGCCCTCTCACAGGATGTCCTCAGCCTCCGAAGAGCTCTTG--GGTTGCCA 2848
Query 282134 TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTA 282193
| | || | || | || ||||| || || | ||| | | || | | ||
Sbjct 2847 CTGATGTCCTTCTTGTTCTTCCTCTTAAACTCCTGGACAAAGTGGTTGACCATCCTGTTG 2788
Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253
||||| || ||||| || | | ||| | || | || || | || | || | ||
Sbjct 2787 TCAAAGTCCTCACCACCAAGATGAGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCC 2728
Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313
|| |||| | | ||||| |||||| ||| ||||| || | ||||| || || |||
Sbjct 2727 TCCTCAATGGTGAGAAGAGACACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACA 2668
Query 282314 TTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367
||| | || | ||| || || ||||||||||| |||| |||||||| |||
Sbjct 2667 TTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGCTGTT 2608
Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427
|| || || || || | | ||||| | |||||||| || ||||| || || ||
Sbjct 2607 GGCTCGTTGATGATACGGAGGACATTGATGCCAGCAATGACACCAGCATCCTTGGTAGCC 2548
Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473
|| || || ||||| || || |||||||| ||||| | ||| ||||
Sbjct 2547 TGCCTCTGAGAATCATTGAAGTATGCAGGTACAGTTACAACAGCAT 2502
>seq12001
Length=6810
Score = 96.9 bits (106), Expect = 3e-14
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403
|| |||| | ||||||||||||||||||||| || || || |||| ||| ||||||
Sbjct 3666 CCGTACGACAGAGCAGCAGCAGTTGGTTCATTGATGATCCTTTGGACATCAAGTCCAGCA 3607
Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463
|| | || ||||| || |||||||| || || | ||| || || || || |||||||||
Sbjct 3606 ATACGGCCAGCATCCTTGGTGGCTTGCCTCTGAGCATCATTGAAGTAAGCTGGAACAGTA 3547
Query 282464 ATAACGGC 282471
|| || ||
Sbjct 3546 ATTACAGC 3539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3638614242109626
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |