Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq856519 116 3e-20 seq70678 102 6e-16 seq146241 96.9 3e-14 seq12001 96.9 3e-14 >seq856519 Length=10792 Score = 116 bits (128), Expect = 3e-20 Identities = 532/831 (64%), Gaps = 32/831 (4%) Strand=Plus/Plus Query 281662 GGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 281721 |||||| | || || || || || | ||||||||| || || |||||||||| |||| Sbjct 7602 GGTCATGACTCCTCCGGCAGTCTCAAGACCAAGAGACAGTGGGGTGACATCAAGGAGGAG 7661 Query 281722 AATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 281781 || | || | || || | | ||| || || || || || | |||||||| Sbjct 7662 AAGGTCCTGCACCTTCTCGTTCCCCTCACCGCTGAGGATTGCAGCCTGGACGGCAGCACC 7721 Query 281782 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 281839 ||| ||||||||||||||||| |||| | || || || | || || ||||| || Sbjct 7722 ATAGGCAACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGCTCCTTCCCGTTGAAGAAG 7779 Query 281840 TTTGAAAGAAGTTGTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTC 281898 | || || || || | || | ||||| | | || || || || | |||| || Sbjct 7780 TCCTGCAGCAGCTG-CTGAACTCTGGGAATTCTGGTGGAACCACCGACAAGGACAACATC 7838 Query 281899 ATGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAA-ACTTTTTCAACGGGTTCAAGA 281956 ||| | ||| | || |||| || | |||| | | |||| | || || | || | Sbjct 7839 ATGGATG-GTGCTCTTGTCCATCTTGGCATCCCTCAGACACTTCTCCACAGGCTCCATGC 7897 Query 281957 CCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA 282016 | | || || | ||| || || || || | || || || | ||| || Sbjct 7898 ACTTC-CTGAAGAGGTCCATGTTGAGCTCCTCAAACCTGGCCCTGGTGATGGTGGAATAG 7956 Query 282017 TAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGT 282076 |||||| ||| || || | ||||| | || || || ||||| | | ||||| || Sbjct 7957 AAATCAACTCCCTCAAAGAGTGAATCGATCTCGATGGTGGTTTGGGCAGTGGAAGAAAGG 8016 Query 282077 GCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG--CT----TTT--GCTG 282128 | | || || | ||||||| ||||| || || | || | || ||| |||| Sbjct 8017 GTCCTCTTCGCCCTCTCACATGAAGTCCTGAGCCTCCTCAAAGACCTGGGGTTTCCGCTG 8076 Query 282129 ATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGAC 282188 || ||| | || | || |||||||| |||| ||| | | || | || Sbjct 8077 AT--------ATCCTTCTTGTGCTTCCTCTTGAACTCTTGGACAAAGTGGTTCACCATAC 8128 Query 282189 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 282248 | || ||||| || || || || | | ||| | || | || || | || | || | Sbjct 8129 GGTTGTCAAAGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTGGCCTTCACCTCAAAGA 8188 Query 282249 GTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAA 282308 || || |||| || | |||| |||||| || || ||||| | ||||| |||| Sbjct 8189 TACCCTCCTCAATAGTGAGGAGAGAGACATCAAAAGTGCCGCCACCGAGGTCAAAGATAA 8248 Query 282309 GTACATTCATTTCTTTGTCT-TGGT-----TTTTATCAAGACCATACGCAAAAGCAGCAG 282362 | |||||| | || | | |||| | || ||||||||||| |||| ||||| | Sbjct 8249 GCACATTCTTCTCACCGACACTGGTAGCCTTCTTGTCAAGACCATAGGCAATTGCAGCTG 8308 Query 282363 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 282422 | ||||| || || || || | || ||||||||||||||||| || ||||| || | Sbjct 8309 CTGTTGGCTCGTTGATGATACGCATCACATTAAGACCAGCAATAACACCAGCATCCTTGG 8368 Query 282423 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 | || || || || ||||| || || || ||||| ||||| | |||||||| Sbjct 8369 TTGCCTGCCTCTGGGAATCATTGAAGTAAGCAGGCACAGTGACAACGGCAT 8419 >seq70678 Length=6846 Score = 102 bits (112), Expect = 6e-16 Identities = 145/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| || || ||||||| ||||||| || | || |||| |||| || | Sbjct 4815 ACATCAAAAGTACCGCCACCCAAGTCAAAAACTAGAA---TCGTTTCGTTGTTTT---TC 4762 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||| |||||| |||| || ||||||||||| ||||| ||||| | | ||| | Sbjct 4761 TTCTCAAAACCATAAGCAAGAGATGCAGCAGTTGGCTCATTTATAATGCGGAGAACTTCC 4702 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || || ||||| | || ||||| || || ||| ||| ||||| || || || || || Sbjct 4701 AGTCCTGCAATACGGCCAGCATCCTTTGTTGCTGTTCTCTGTGAGTCATTGAAGTACGCC 4642 Query 282455 GGAACAGTAATAACGGCATCTGT 282477 |||||||||| || || | ||| Sbjct 4641 GGAACAGTAACCACCGCTTTTGT 4619 >seq146241 Length=3333 Score = 96.9 bits (106), Expect = 3e-14 Identities = 526/826 (64%), Gaps = 24/826 (3%) Strand=Plus/Minus Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||| || ||||| || | |||||| ||||||||||||||||| | || | Sbjct 3318 GTCATCACACCCCCGGCTGTCTCCAGACCAAGGGAAAGAGGAGTGACATCCAACAGCAGC 3259 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 281781 | | || | || || | | || ||||| | || || || | |||||| || Sbjct 3258 AGGTCCTGGACCTTCTCGTTGCCCTCTCCGCTCAAGA-TGGCAGCCTGGACAGCAGCTCC 3200 Query 281782 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 281839 || |||||||| |||||||| || | | || ||| || | || || ||||| || Sbjct 3199 GTAGGCAACAGCCTCATCAGGGTTGATGCTCTTGCAT--AGCTCCTTGCCGTTGAAGAAG 3142 Query 281840 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899 | ||||| || || ||||||| | || || |||||||| | |||| ||| Sbjct 3141 TCCTGCAGAAGCTGCTGCACTCTAGGAATCCTAGTGGAACCTCCAACAAGGACAACATCA 3082 Query 281900 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 281958 ||||| ||| | || |||| |||| |||| | | || || || || || | || Sbjct 3081 TGCACG-GTGCTCTTGTCCATCTTTGCATCCCTCAGACACTTCTCCACAGGCTCCATACA 3023 Query 281959 AGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA 282016 || || | || || || || || || || | || | ||| | || Sbjct 3022 CTTCCTGAAGAGATCCATGTTCATC--TCCTCAAACCGGGCACGGGTGATGGTGG-AGTA 2966 Query 282017 TAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 || || || || || |||| || |||| || || || || || | | || || || Sbjct 2965 GAAGTCTATGCCCTCAAACAGCGAGTCAATCTCGATGGTGGTCTGGGCAGTGGAGGAGAG 2906 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--A 282133 | | ||| || | ||||| | |||||| || || || | ||| ||| | ||| | Sbjct 2905 AGTTCTTTTTGCCCTCTCACAGGATGTCCTCAGCCTCCGAAGAGCTCTTG--GGTTGCCA 2848 Query 282134 TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTA 282193 | | || | || | || ||||| || || | ||| | | || | | || Sbjct 2847 CTGATGTCCTTCTTGTTCTTCCTCTTAAACTCCTGGACAAAGTGGTTGACCATCCTGTTG 2788 Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 ||||| || ||||| || | | ||| | || | || || | || | || | || Sbjct 2787 TCAAAGTCCTCACCACCAAGATGAGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCC 2728 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 || |||| | | ||||| |||||| ||| ||||| || | ||||| || || ||| Sbjct 2727 TCCTCAATGGTGAGAAGAGACACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACA 2668 Query 282314 TTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 ||| | || | ||| || || ||||||||||| |||| |||||||| ||| Sbjct 2667 TTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGCTGTT 2608 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || || || || || | | ||||| | |||||||| || ||||| || || || Sbjct 2607 GGCTCGTTGATGATACGGAGGACATTGATGCCAGCAATGACACCAGCATCCTTGGTAGCC 2548 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || || ||||| || || |||||||| ||||| | ||| |||| Sbjct 2547 TGCCTCTGAGAATCATTGAAGTATGCAGGTACAGTTACAACAGCAT 2502 >seq12001 Length=6810 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || |||| | ||||||||||||||||||||| || || || |||| ||| |||||| Sbjct 3666 CCGTACGACAGAGCAGCAGCAGTTGGTTCATTGATGATCCTTTGGACATCAAGTCCAGCA 3607 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || ||||| || |||||||| || || | ||| || || || || ||||||||| Sbjct 3606 ATACGGCCAGCATCCTTGGTGGCTTGCCTCTGAGCATCATTGAAGTAAGCTGGAACAGTA 3547 Query 282464 ATAACGGC 282471 || || || Sbjct 3546 ATTACAGC 3539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3638614242109626