Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_023747.1 Length=59672 Score E Sequences producing significant alignments: (Bits) Value seq71034 118 4e-22 >seq71034 Length=3563 Score = 118 bits (130), Expect = 4e-22 Identities = 283/401 (71%), Gaps = 28/401 (7%) Strand=Plus/Plus Query 54710 CACCACAACTACACGCAGAAGGAGCGGCACGGCGACCGTGACGTGTGGCTGACCCGTAAG 54769 |||||||||||| ||||||||||| ||| || | || ||| | |||| || ||| Sbjct 2282 CACCACAACTACGTGCAGAAGGAGCACCACTTCGGCAAGGATGTGCTGGTGACGCGCAAG 2341 Query 54770 GGTGCG--ATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCT 54827 || ||| |||| |||| ||| || | || ||| | |||||||| |||||||| | Sbjct 2342 GGCGCGGTATCGGCGCG--CGAAGGGGAGCTCGGCATCATTCCGGGATCGATGGGGGCGA 2399 Query 54828 GTTCGTATGTCGTGACCGGCAAGGGCAATCCCGAGGCGTTGTGCTCGGC-GCCG-CATGG 54885 ||| ||||| ||||||||||||| |||| | ||| | | || || | || || Sbjct 2400 AGAGTTATATCGTGCGCGGCAAGGGCAATGCCGA-GAGTT-TCAACAGCTGCAGCCACGG 2457 Query 54886 TGCGGGCCGCCGGTTCTCGCGCA-CGAAGGC--GCGCAAGCTGTTCACGGTCGACGACCT 54942 || |||||| | |||| ||||| | |||| ||| || |||||||||||| Sbjct 2458 CGCCGGCCGCACCATGAGCCGCACCGAAGCCAAGCGC-CGCTATT--CGGTCGACGACCA 2514 Query 54943 CG--AAGCGCGTATGACGGGCATCGAGTACCGCAAGGGCG-AGGCGTGGGTCGACGAGAT 54999 | ||| ||| || ||| |||||| |||||||| || |||||| | ||||||||| Sbjct 2515 GGTCAAG-GCGACCGA-AGGCGTCGAGTGCCGCAAGGACGAAGGCGT-GATCGACGAGA- 2570 Query 55000 TCCCGA-CGCATACAAGCCGATCGACGTCGTGATGCACGACGCCGA--GACGCTGGTGTC 55056 |||||| || |||||| ||||||| ||||||||| | ||| || ||| ||||| Sbjct 2571 TCCCGATGGCCTACAAGGACATCGACGCCGTGATGCA-GGCGCAGAGCGAC-CTGGTCGA 2628 Query 55057 GGTGGATGC-CGAGCTGCGGCAGCTCTTGAACGTCAAGGGG 55096 |||| ||| | |||| |||| || || ||| |||||| Sbjct 2629 AGTGG-TGCACACGCTGAAGCAGGTCGTGTGCGTAAAGGGG 2668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 186120085167108