Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_024123.1 Length=64113 Score E Sequences producing significant alignments: (Bits) Value seq20073 113 2e-20 >seq20073 Length=1478 Score = 113 bits (124), Expect = 2e-20 Identities = 173/236 (73%), Gaps = 13/236 (6%) Strand=Plus/Minus Query 53590 CGATGTCCAAGCCGAGCGCCGCCGGCAGGTC--ACTGCCGAAGGATG-GACGCCGGAGCA 53646 |||||| | || ||||| |||| ||| || || | ||||| | ||| | |||||| Sbjct 233 CGATGTGCTGGCGGAGCGTTGCCGCCAGATCGAACAG--GAAGGCTACGACTC-GGAGCA 177 Query 53647 TGACGATGCGCACGCCTGCGACGAGATTGCGGCCTTCGCGTGCTTCTACGCGATGCCGCC 53706 ||||| || ||| | || ||||||||| |||| || ||||||||| |||||||| Sbjct 176 CGACGACGCTCACCCGAACGGCGAGATTGCCGCCTATGCTGCCTTCTACGCCATGCCGCC 117 Query 53707 GGCAGCGCGCGATTGGGACGCCAGCAG-CACCGGCTACGGCGACACCCTGGGCGAGGCCA 53765 ||| ||||| ||| |||| | || ||||||||| ||||||| | ||| || |||| Sbjct 116 GGCCTGCCGCGAATGGCCCGCC-GAAGACACCGGCTATGGCGACAACTTGGCCGCTGCCA 58 Query 53766 TTGTGCCTGAAGGCTGG--GAACC--GAAGACCGGTGATCGACGCCGCGAGCTGGT 53817 ||||||| | |||||| || || || || || ||||| || ||||||||||| Sbjct 57 TTGTGCCGCACGGCTGGCCGATCCCTGAGGA-TGGCGATCGCCGTCGCGAGCTGGT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199844362281714