Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_024143.1 Length=53255 Score E Sequences producing significant alignments: (Bits) Value seq833769 122 3e-23 seq28280 89.7 2e-13 >seq833769 Length=269 Score = 122 bits (134), Expect = 3e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 41047 GATTTTGGGAACCCGCTGCCGTAGAGCCACGCGATCGAGTCGCGGATCTCGAAGCCCGCG 41106 || || ||||| || |||||||| ||| |||||| ||||||||||||||| ||||| Sbjct 59 GACTTCGGGAAGCCCGAGCCGTAGACCCAGGCGATCATGTCGCGGATCTCGAAACCCGCA 118 Query 41107 TCCTCGATGGCCACGGTCAGCCGGTGCCAGGTGCGGGAGCCGCCGAAGGCGAGCAGGTGC 41166 ||||||||| |||| || || ||| |||||| | ||| ||||||| || || || Sbjct 119 TCCTCGATGCGAACGGCCATGCGATGCTGGGTGCGCGTGCCTGCGAAGGCCAGTAGATGG 178 Query 41167 CCACCGGGCTTGAGGACCCGCAGGCATTGCTCCCACATCTCGACG 41211 || || ||||| || || |||||||| ||| |||| || ||| || Sbjct 179 CCGCCAGGCTTCAGTACGCGCAGGCACTGCGCCCAGATATCGGCG 223 >seq28280 Length=381 Score = 89.7 bits (98), Expect = 2e-13 Identities = 120/165 (73%), Gaps = 8/165 (5%) Strand=Plus/Plus Query 41128 CGGTGCCAGGTGCGGGAGCCGCCGAAGGCGAGCAGGTGCCCACCGGGCTTGAGGACCCGC 41187 |||||| ||||||| ||| ||||||| |||||||| || || ||||| | || ||| Sbjct 1 CGGTGCTGCGTGCGGGTACCGGCGAAGGCCAGCAGGTGGCCGCCAGGCTTCAACACGCGC 60 Query 41188 AGGCATTGCTCCCACATCTCGACGTCGAAAGCGATGCCCGA-GTTGTCCCACTTCTTGCC 41246 ||||| | |||| |||||| || || || || || ||||| |||||| Sbjct 61 AGGCACTCGGCCCATATCTCG--GT-----GCTGGGCACGTCGTAATCCCAGCGCTTGCC 113 Query 41247 CATGAAGGCCAGTTCGTAGGGCGGGTCGGTGACGATGGAGTCGAC 41291 |||||| | ||| ||||||| || ||||| ||||||| |||||| Sbjct 114 CATGAACGACAGGCCGTAGGGTGGATCGGTCACGATGGCGTCGAC 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166092373014354