Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq831462 192 2e-44 seq1975374 176 1e-39 seq5173 118 3e-22 seq32268 96.9 1e-15 seq28707 96.9 1e-15 seq980058 87.8 6e-13 seq29140 84.2 7e-12 >seq831462 Length=205 Score = 192 bits (212), Expect = 2e-44 Identities = 165/204 (81%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 36863 CAGCGAGGACTGGAAGTGCCTTTTCAGCGCCTCGGTCGAGAAGCAGCGCGCCGAGCCTGG 36922 ||| ||||||||||||||||||||||| || ||| | |||||||||||||| ||||| || Sbjct 205 CAGTGAGGACTGGAAGTGCCTTTTCAGTGCATCGCTGGAGAAGCAGCGCGCGGAGCCAGG 146 Query 36923 GCTTGATGGCGGATTCGTCGTCATGGCCACCTCGACCCGCAAGCAGTCGGCCAAGTGGTT 36982 || || || || ||||| || |||||| ||||| ||||||||||| |||||||| Sbjct 145 TCTCGACGGTGGCTTCGTGGTGATGGCCGTATCGACTCGCAAGCAGTCCCAGAAGTGGTT 86 Query 36983 CAGTGATCTGTTCGAGGTCATCCACGCGTTCGGTGCTGAGCGCGGCGTCCGCTGGACCGA 37042 ||| |||||||||||| | || || || ||||| || |||| | ||| |||||||| || Sbjct 85 CAGCGATCTGTTCGAGCTGATGCATGCCTTCGGCGCCGAGCATGACGTGCGCTGGACTGA 26 Query 37043 GGCGGACAGGTGGGGAGGGCGTTA 37066 | ||||| |||||||||||| || Sbjct 25 GCAGGACAAGTGGGGAGGGCGGTA 2 >seq1975374 Length=208 Score = 176 bits (194), Expect = 1e-39 Identities = 162/205 (79%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 40058 GACTGGTTCGGCTGCGTACCGAGCTACATCATCACCCTGGCTGCCGATTACTGCTCACAG 40117 || ||||||||| ||| ||| || |||||||||| ||||||| || |||||| | Sbjct 205 GATTGGTTCGGCGACGTGCCGGCCTTCATCATCACCTTGGCTGCTGACTACTGCGCCGCC 146 Query 40118 TGCAGCGATGCGGACTTCTGTGCACTGGTCGAGCATGAGCTCTACCACATCGCCCAGGCA 40177 || ||| || |||||||| || ||||| ||||| ||| | | |||||||| ||||| Sbjct 145 TGTTCCGACGCTGACTTCTGCGCGCTGGTGGAGCACGAGTTATTTCACATCGCTCAGGCC 86 Query 40178 GTCGATCAGTACGGCGCGCCCAAGTTCACGCAAGACGGATTACCAAAGCTTGAGATGCGC 40237 ||||| |||||||| ||||||||||| ||||| ||| | || ||||||||||||||| Sbjct 85 AAGGATCAATACGGCGCTCCCAAGTTCACCCAAGAAGGACTGCCCAAGCTTGAGATGCGC 26 Query 40238 GGCCATGACGTCGAAGAGTTCGTCG 40262 || || ||||| ||||||||||||| Sbjct 25 GGACACGACGTTGAAGAGTTCGTCG 1 >seq5173 Length=208 Score = 118 bits (130), Expect = 3e-22 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 36671 CATGACTGAGTTCGCCATCCGCAGCACGCAGGACTTAAACCGCCTGTACGGCGCACTGCA 36730 |||||| |||||||| ||||||||| || || | | ||| || || | ||||| Sbjct 58 CATGACCGAGTTCGCAATCCGCAGCCAGCGCGATATCAGCCGTCTTATGGGTGTCCTGCA 117 Query 36731 CGCCATCGATCTGACCAAACCCAAGGTAGTGGTAATCAAGGACGAGAAACGCCCTGACGT 36790 ||||| ||| | |||||||||||| | || || ||||| |||||||| ||||| ||| | Sbjct 118 CGCCACCGACTTCACCAAACCCAAGATCGTAGTCATCAAAGACGAGAAGCGCCCGGACAT 177 Query 36791 CCTCAACCGCAAGATGTGGGCAATGCTC 36818 | ||| ||||||||||||||||||||| Sbjct 178 CTGCAATCGCAAGATGTGGGCAATGCTC 205 >seq32268 Length=434 Score = 96.9 bits (106), Expect = 1e-15 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 15660 ATGGGGTGCTAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCATATAATTCAATGA 15717 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 416 ATGGGGTGCTAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCATATTTTTCAATGA 359 >seq28707 Length=214 Score = 96.9 bits (106), Expect = 1e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40583 CCTGGCCAAGCGTTGGGTGGACATGTTCCACGACGCGCGAGAGAGGTTCCGCCACCAGGC 40642 |||||||||||| |||||| ||||| | || || || || | || || | || | Sbjct 9 CCTGGCCAAGCGCTGGGTGACGATGTTTGAAGATGCCCGCAAGCGCTTTCGTGAAGAGAC 68 Query 40643 GATTGACATACCCATCGCCAACCGGGCCTACAGGCTTCGGGCTATGGGGAGGATTATCGA 40702 || || || ||||||||||| || | | ||||||| || ||| | || |||| Sbjct 69 CGCAGAGATCCCGATCGCCAACCGAGCATTCCGGCTTCGCGCCATGAACCGTTTTGTCGA 128 Query 40703 GAAGGCCGAGAGCATGAAGAACCTGTCTCTCGCACTACAGGTGCTTGAGCAGGCGGCAAA 40762 | |||||||| ||||||||| | ||||| | ||| | || |||||||| || || Sbjct 129 GCGGGCCGAGACGATGAAGAACATCGGCCTCGCCATGCAGATCCTCGAGCAGGCCGCGAA 188 Query 40763 GGAAACTGGCGACGCCTACGTGAATC 40788 |||| ||||||| |||||| |||| Sbjct 189 GGAAGTCGGCGACGTCTACGTCAATC 214 >seq980058 Length=421 Score = 87.8 bits (96), Expect = 6e-13 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 15655 CTTGCATGGGGTGCTAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCAT 15705 || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 75 CTAGCATGGGGTGCTAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCAT 25 >seq29140 Length=343 Score = 84.2 bits (92), Expect = 7e-12 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 15660 ATGGGGTGCTAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCAT 15705 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 233 ATGGGGTGCTAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCAT 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159335321929624