Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_024782.1 Length=36838 Score E Sequences producing significant alignments: (Bits) Value seq3078 98.7 2e-16 seq2938 89.7 1e-13 >seq3078 Length=215 Score = 98.7 bits (108), Expect = 2e-16 Identities = 100/128 (78%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 25580 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 25639 |||||||||| || ||||||||||| || || ||||| ||||| || ||||||| | Sbjct 133 CGATGCAGGAGGCTACCGGCAAGGCAGTCAGTGAGACGGTTGCCGAATTTGCCAAGCTCG 74 Query 25640 CCGACGAACCGGTCAAAGCCT-CGCAACAGCTCAACGAGAAATATCACTACCTGACCGCC 25698 |||| || ||||| ||||| | ||| | |||||| ||| | || ||||| ||||| || Sbjct 73 CCGATGACCCGGTAAAAGCGTCCGCCGC-GCTCAATGAGCAGTACCACTATCTGACAGCT 15 Query 25699 TCGGTTTA 25706 |||||||| Sbjct 14 TCGGTTTA 7 >seq2938 Length=238 Score = 89.7 bits (98), Expect = 1e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 24996 CGGCATTTCGGCAGGTCAGTACCGC-CAGGCCATGCGGCAGTTGCCGGCGCAGATCACCG 25054 ||| || || || || ||| || || ||||||||||| ||| | ||||||||| |||||| Sbjct 29 CGGGATCTCTGCGGGCCAG-ACGGCACAGGCCATGCGTCAGCTTCCGGCGCAGTTCACCG 87 Query 25055 ACGTGGTCACCAGCCTGGCCAGCGGGATGCCACTGTGGATGGTTGCCATCCAGCAAGGCG 25114 || | ||||||||||| |||| ||||| | | | || | |||||||| | Sbjct 88 ACATCTTCACCAGCCTGCAGGGCGGCATGCCCTTCTTCACCGTGCTGGTGCAGCAAGGTG 147 Query 25115 GGCAGATCAAGGACAGTTTCGGTGGCGT 25142 | |||||||||||||| ||||| || || Sbjct 148 GCCAGATCAAGGACAGCTTCGGCGGTGT 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114854263241600