Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq894772 185 2e-42 seq50588 129 1e-25 seq50522 116 9e-22 seq53833 96.9 9e-16 >seq894772 Length=650 Score = 185 bits (204), Expect = 2e-42 Identities = 356/516 (69%), Gaps = 17/516 (3%) Strand=Plus/Plus Query 18157 TGCGCTTTCATTCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCGGGGTCG 18216 ||||| ||||| ||||| | ||| | | | |||| |||| |||||||| |||||| Sbjct 71 TGCGCCTTCATCCCGAAGTACCAGTTGCCGCTCTTCTGGGTCGACTGCATCTCTGGGTCG 130 Query 18217 CGCTTGCCGCTGCCATTCTTGGTCGAGCTGGGCGCGGCAATCAGCGAGGCGTCGACCACC 18276 |||| ||| |||| |||||||||||||| || || | ||||||| || || ||| || Sbjct 131 CGCTCACCGGTGCCGTTCTTGGTCGAGCTCGGTGCCGAGATCAGCGTCGCATCCACCGCC 190 Query 18277 GTGCCCTCTTTGAGCAGGTAGCCCTTCGCACTGAGTTGCGCGTTGACCGTCTGCAGAAAT 18336 || || | ||||||| ||| ||||| || || | ||||||||| | ||| || Sbjct 191 GTACCTGCCTTGAGCATCAGGCCTTTCGCGCTCAGCAGGTCGTTGACCG-CAGCAAGCAT 249 Query 18337 --TGCTCGGCCAGTTGGTGTCGCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGT 18394 || | | | | | || ||||||||| || ||||||||||| ||| ||||| | Sbjct 250 CTTGGT-GCCGATATCTTGCGCCTCCAGCAAATGACGAAAGCGCAGGATGGTGACCGCAT 308 Query 18395 CCGGCA----GTCGGCTTATGCCTCCCAGCCCCGCGAATTGCCGATACAACGGCACGTCG 18450 |||||| |||||| | | | | || | |||||||| || |||| |||| |||| Sbjct 309 CCGGCAAGCGGTCGGCATCGACGTTC-AGTCGCGCGAATTCGCGGTACAGCGGCGTGTCG 367 Query 18451 TACAGCGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATG 18510 ||||||||||||||| |||| || | | | |||||| | ||||| ||||| || Sbjct 368 ATCAGCGCCTCTTCCATTGCCATATCGCTGAAGCTGAACCAGTTCTGCATGAAGTGAATC 427 Query 18511 CGCAGCATCGTTTCGACTGGAAACGGCTTCCGACCCGTCGCCTTGACCGGCGCA---TGC 18567 |||||||| || |||| | ||| ||| || || || |||| | | | | ||| Sbjct 428 CGCAGCATGGTCTCGATGGCAAAAGGCGGCCTGCCAGT---CTTGGCGCGAGGACTGTGC 484 Query 18568 GGCGCTATCAACGCCAAAAACGCCTGCCACGGCACCACACGTTCCATCTCA-TCCAGAAA 18626 ||| | || | ||| | | |||||| || || || ||||||||| || ||||| Sbjct 485 GGCTCGATGAGGCCCACCAGTGTGGTCCACGGAACGACGCGCTCCATCTCAGTCAAGAAA 544 Query 18627 TACCTGCTTGCGCGTGCGTCGGTTGCTCAGGTCCAG 18662 | | |||| | ||||| |||| || |||||| Sbjct 545 T-CGCGCTTCCTGGTGCGCTTGTTGGTCCAGTCCAG 579 >seq50588 Length=314 Score = 129 bits (142), Expect = 1e-25 Identities = 131/167 (78%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 7970 CATGAACAGGTTGCGGAAATTGCCCGGCCCCTTGGCACTCTTCATCGCCTCGCGCAGCGT 8029 |||||||||||||||||||||||||||||| | | || ||| || |||| | Sbjct 313 CATGAACAGGTTGCGGAAATTGCCCGGCCCACGCGAGTCCCGCAGCGCTTCACGCAAGGC 254 Query 8030 GTCGACATCCTCTTGCCTCTGCGCCGCG--TCGGTCATGTACAGGATGAAACCGGCGTGG 8087 ||| || ||| | |||| | || ||| ||||||||||| ||||| || ||||| || Sbjct 253 GTCCACGTCCA-TGCCCTCCG-GCTGCGGATCGGTCATGTAGAGGATAAACCCGGCATGC 196 Query 8088 GAGCCGTTTTTGTAGTACCGGCGGCGGAACAGCGTGGCCGATTCGTT 8134 |||||||| ||||||||| ||||||||||| ||||||||||||||| Sbjct 195 GAGCCGTTGGTGTAGTACCTGCGGCGGAACAACGTGGCCGATTCGTT 149 >seq50522 Length=209 Score = 116 bits (128), Expect = 9e-22 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 7799 GCCGAATCCGCCGGTGTTGTTCGGGATGATGCCCATGAGCTGCGGCGGCACGCGGTGCGC 7858 |||||| || |||| || | ||| | |||||||| |||||||| || | ||| |||| Sbjct 194 GCCGAAGCCACCGGCATTCTGCGGCACGATGCCCAGCAGCTGCGGGGGTATGCGCAGCGC 135 Query 7859 GGCGAGTTGGTCGTCGCGCGTGACGTTTTTGACGTTCCAGAACTCGTCCTTCGCGGCCAC 7918 ||| || ||| || || || || |||| | |||||| ||||| || ||||| Sbjct 134 GGCCAGAATGTCATCACGAGTCACACGCTTGATGCCGGTGAACTCATCCTTGGCCGCCAC 75 Query 7919 CTCGGACACCGGTAGCAGCTGGATCCCGTCCTTCTTGCCGTTAGGCGCGTACATGAACAG 7978 ||| | ||| | |||||| | || ||||||||||| || |||| | ||||||||| Sbjct 74 TTCGCTGATCGGGATCAGCTGCAATCCATCCTTCTTGCCATTGGGCGAATGCATGAACAG 15 Query 7979 GTTGCGGAAATTGC 7992 |||||||||||||| Sbjct 14 GTTGCGGAAATTGC 1 >seq53833 Length=229 Score = 96.9 bits (106), Expect = 9e-16 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 37055 GCTGTTGTGGCAAGCCTTCGGCGCGAAGGGCTTGGTGGCGCTCGCCTTTTGGTTCGGGAG 37114 |||| |||||||| ||||||||| |||| | || || || ||| |||||||| Sbjct 223 GCTGCTGTGGCAATGCTTCGGCGCCCAGGGTGTCGTTGCCCTGATCTTCTGGTTCGGTTC 164 Query 37115 CCTATTCGCGGAGCAGATCCGCCAGTC-CCACAAGAGCTATCCATTCCTGGAGCTGGTCG 37173 || ||||| ||||||||||| ||||| | || | | ||| ||||||||| || Sbjct 163 ACTGTTCGCCGAGCAGATCCG-CAGTCGCTACCAATCGTTTCCGTTCCTGGAGGCCACCG 105 Query 37174 GCGAGCCTGGGGCCGGTAAGACTACGCTGATTGAATTTCTCTGGAAGCTGTGCGGCCGAC 37233 ||||| | || ||||| ||||| || || | | | | ||||| ||| |||||| Sbjct 104 GCGAGGCCGGCGCCGGCAAGACCACCGTGCTCAACCTGTTATGGAAACTGCTCGGCCGGG 45 Query 37234 GCGATTACGAGGGCTTCGACCCCAGCAAGTCGTCC 37268 || |||||| |||||||| || ||||||| || Sbjct 44 CCGGTTACGAAGGCTTCGATCCGTCCAAGTCGACC 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124729233048568