Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq95597 84.2 1e-11 seq839203 82.4 5e-11 >seq95597 Length=7948 Score = 84.2 bits (92), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 33516 ATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTA 33575 ||||| |||||| || | | | ||||| || ||||| ||| || || |||||||| Sbjct 2546 ATCGT-ACCACCCCTGAGCCTGAGGACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTA 2488 Query 33576 ATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 || | ||||||||| | || ||||| || || || ||||| |||||||||||||| || Sbjct 2487 GTCAGCAAGTGTGCGTCCATCCTCCAACTGCTTGCCAGCAAATATCAAACGCTGCTGGTC 2428 Query 33636 TTGCGGCACACCTTCTTTGTC 33656 | || | ||||| ||||| Sbjct 2427 CGGAGGAATCCCTTCCTTGTC 2407 >seq839203 Length=7618 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/204 (70%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| |||||| || ||||||||||||| || ||||| | || || | ||| Sbjct 935 TGAAGAGTGGACTCTTTCTGGATGTTGTAATCGGCTAGGGTGCGACCATCCTCAAGTTGC 994 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||| ||||| ||||| || || | || | || || ||||| || ||| Sbjct 995 TTGCCAGCAAAGATCAACCGCTGTTGGTC-CGGGGGATGCCCTCCTTGTCCTGGATCTTC 1053 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | || |||| ||| | |||||| || || || |||| ||||| || || || || Sbjct 1054 -GCTTTGACATTGTCGATCGTGTCGGAAGACTCAACCTCAAGAGTGATGGTCTTGCCGGT 1112 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || || |||||||| Sbjct 1113 GAGGGTCTTCACGAAAATCTGCAT 1136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 320379762361920