Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq980070 113 4e-20 >seq980070 Length=1613 Score = 113 bits (124), Expect = 4e-20 Identities = 354/540 (66%), Gaps = 30/540 (6%) Strand=Plus/Minus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 ||||| | |||||||| ||||| ||| | ||||| || || | | || |||||| Sbjct 909 TTCGGCTACCAGATGCGCTTCAACCTGCAGGACGGCTTCCCGCTGGTGACGACCAAGAAG 850 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 |||| ||||||||||||||| |||||| | |||||||| || || || || ||| Sbjct 849 GTGCACCTGAAGTCGATCATCCATGAACTCATCTGGTTCCTGAACGGTTCGACCAATATC 790 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 || || | || || |||| ||||||||| || ||||| || | || |||||| Sbjct 789 GCCTACCTGAAGGAAAACGGCGTCTCGATCTGGGACGAGTGGGCCGACGAGAACGGCAAC 730 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGAT 142482 || || || |||||||| | |||||| || | || | | | | ||| Sbjct 729 CTGGGCCCGATCTACGGCTACCAGTGG----------CGCAGCTGGCCGGCCCCGGA-CG 681 Query 142483 GACGTCACAGACGAACCGATCGATCAGATCCGCCGGATCATTACTGACTTGAAGAAGTCT 142542 | || |||| ||| | | || ||| | || ||| || || | | ||| | Sbjct 680 GCCGGCACA-TCGACCAGGTCAGCCAGGT--GCTGGACCA-----GA--TCAGGAACAAT 631 Query 142543 CCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACG-ACATGGC 142601 || | || || || | |||||| |||| |||||| || || || | || | ||| Sbjct 630 CCGGACTCGCGCCGCCTGATCGTCTCCGCCTGGAACGTGGCCGACGT-GCCGCAGATGAA 572 Query 142602 ACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAG--AAGCGTCTGTCA 142659 || || || || ||| | ||||| ||| |||| | ||| | ||| ||||| Sbjct 571 GCTGCCGCCCTGCCACGCCTTCTTCCAGTTCTACGTGG--CCGACGGCAAG---CTGTCC 517 Query 142660 TGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCG 142719 |||||||| || ||||| || ||| ||||||||||| || ||||| || ||||| Sbjct 516 TGCCAGCTCTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCCTTCAATATCGCTTCC 457 Query 142720 TACGCGCTTCTCACACAGCTCATTGCTCGCGAATGCGGTCTGGAACTCGGAGACTTCGTC 142779 ||||| || || || || | || || | | ||| |||||| | || |||||| || Sbjct 456 TACGCCCTGCTGACCCACATGATGGCCCAGCAGGCCGGCCTGGAAGTGGGCGACTTCATC 397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487499352647760