Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq835057 114 3e-21 seq7353 114 3e-21 seq138243 89.7 1e-13 >seq835057 Length=261 Score = 114 bits (126), Expect = 3e-21 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 32611 GCGTTGTTCGCACGGCTGACATCATCAATGACAGCCTGTTGCGTGCACACCTGTGGGCCG 32670 |||| || |||||||| |||||||| ||||||||| | || || |||||||||| Sbjct 1 GCGTGGTGCGCACGGCCGACATCATTGCTGACAGCCTCGAGGCCGCCCATCTGTGGGCCG 60 Query 32671 TAGACCGTGGCATCACCAAACAATACGTCAATGACGTGATTGAAGGCGTGAACGCGTACC 32730 | ||||| ||||||| ||| |||||| | |||||| || ||||| ||||| | || Sbjct 61 TCGACCGCGGCATCAGCAAGACCTACGTCGACGACGTGCGCGAGGGCGTCAACGCCTTCC 120 Query 32731 TGCGCAACCTGGTGAGCCTGGGCGCAATTCTTGGCGGCACGTGTTGGGCTGACCCTGA 32788 ||||| |||| || || |||||| || || ||||||| || ||| ||||| || Sbjct 121 TGCGCGGCCTGAAGACCCAGGGCGCGATCCTCGGCGGCAACTGCTGGATCGACCCGGA 178 >seq7353 Length=217 Score = 114 bits (126), Expect = 3e-21 Identities = 130/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 217 GCCATTCATGCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCA 276 ||| | |||| | |||||||||||||| ||||| || | | ||| | | ||| || Sbjct 175 GCCTTGCATGTCGACCACGATTTCAGTGGTGTAACGCTTGATGCCGTCTTTTTCC---CA 119 Query 277 CTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCT 336 || ||| ||||||||| |||||| ||| | |||| |||||||||||||||| | Sbjct 118 CTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTACTCACC 59 Query 337 GGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTC 390 ||||| ||||||| ||| ||||| || ||| ||||||||||| ||||| || Sbjct 58 AGCGATCTCTGCCACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTC 5 >seq138243 Length=1642 Score = 89.7 bits (98), Expect = 1e-13 Identities = 196/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 235 GATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTGCAGCGC 294 ||| || || | |||||| || | ||| ||| ||| ||||||| || ||||| Sbjct 141 GATGTCGGTGGCGTAGCGTTCGATGCCGTCCTTGTCGGTGTACTTGCGGGTCTGCAGGCG 200 Query 295 GCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGCTT 354 |||||| | | | ||| | ||||| ||||||||||| | ||||||| || || Sbjct 201 GCCTTCGACGTAGACCGAGGAACCTTTCTTCAGGTACTGGCCGACGATTTCAGCGAGACG 260 Query 355 TCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGCTTATC 414 ||||||| | | |||||||||||| || |||||||| ||| || || | || Sbjct 261 GCCGAAGAAGGAGATGCGGTGCCATTCGGTCAGTTCTTTCTGCTCGCCGGTGTTGCGGTC 320 Query 415 CTTCCAGGTTTCAGACGTGGCAATTGATAACTGCGCCACGCCGTTGCCGTTCGGCAGCGT 474 ||| | | | || ||||| | || | | || | | ||| |||| |||||| Sbjct 321 CTTGGATTTGTACGAGGTGGCCACTGCGATGTTGGCGATGGCGTCGCCGCTCGGCATGTA 380 Query 475 GCGGAATTCTGGATCGTTGCCTAAGTTGCCAATGATTTCTACTTTGTTCAGTGA 528 ||||| ||| |||||| ||| | |||||| | ||| || ||||| | ||| Sbjct 381 GCGGATTTCCGGATCGCGGCCGAGGTTGCCGACGATGATGACCTTGTTGACTGA 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132060555449506