Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_025431.1 Length=45718 Score E Sequences producing significant alignments: (Bits) Value seq28963 120 9e-23 seq29243 89.7 1e-13 >seq28963 Length=574 Score = 120 bits (132), Expect = 9e-23 Identities = 181/257 (70%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 20535 GGCTGGAAGCCCACAGAGTTCACCTCTGACGGGCATCCGAAGGTCGACGAAGAGACGCTG 20594 |||||| ||||| ||||||||| | || || |||||| |||||||||| ||| Sbjct 537 GGCTGGCAGCCCCAGGAGTTCACCGAGAAGGGCCAGCCGAAGATCGACGAAGAAGTCCTG 478 Query 20595 TCCGCGCTGCCGTACCCGGAGGCCAAGCTGCTCACGCAGTACCTCATGGTGCAGAAGCGC 20654 |||||| || |||| | ||| || | || || |||| || | |||||| Sbjct 477 GGCGCGCTCAAGTTCCCGATCATCCCGCTCCTGCTGGAGCACTTCATCGTCAACAAGCGC 418 Query 20655 CTCGGCCAGCTCTCGGACGGCAAGGAAGCGTGGCTCAAGAACGTCCGCA---ACGGGCGC 20711 |||||||||||| | || ||| | || |||||||||||| | || | |||| ||| Sbjct 417 CTCGGCCAGCTCGCCGAAGGCGACGAGGCGTGGCTCAAGGCCATCAAGAAGGACGGCCGC 358 Query 20712 ATCCACGGCTCGGTGAACACCAACGGTGCCGTCACCGGGCGCATGACCCACAGCAAGCCA 20771 ||||||||| ||||| |||| || || ||||| |||||||| ||| ||||| Sbjct 357 ATCCACGGCAGCGTGAATCAGAACGCAGCGGTGACCGGCCGCATGACGCACTCGAAGCCG 298 Query 20772 AACATGGCCCAGGTTCC 20788 ||||| || ||||| || Sbjct 297 AACATCGCTCAGGTGCC 281 >seq29243 Length=368 Score = 89.7 bits (98), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 21183 AAACGCAAGGCCAAGACGCAGGGATGGCTCAAGGGCCTCGACGGTCGCATCCTCATGGTG 21242 || ||| |||| ||| |||||| || | || |||||||| || | || | Sbjct 242 AAGCGCGCGGCCGAGA---AGGGATACCTGATCGGTCTCGACGGCCGGAAGCTGCACATC 186 Query 21243 CGCTCCGAACATGCGGCTCTCAACACGCTCCTGCAGTCCGCAGGCGCAATACAAATGAAA 21302 ||| ||| || || || ||||| || || || ||||| || || || | ||||| Sbjct 185 CGCAGCGACCACGCCGCGCTCAATACCCTGCTCCAGTCGGCCGGTGCGCTGGTGATGAAG 126 Query 21303 CGGGCTCTCGTGATCCTCGACAACAACCTCCAGGCCCTCGGTCTCATACCGGGCGTCAAC 21362 || || |||||||||||| | |||| || ||| || | | ||||||||| || Sbjct 125 AAAGCCCTGGTGATCCTCGACGCCGACCTGCAAGCCGCAGGGTTGGTGCCGGGCGTCCAC 66 Query 21363 TACGAGTTCGTCGGGAATATCCACGACGAGTGGCAGATAGAGGTCGATGAAGACA 21417 ||||||||| ||| || |||| ||||||||||| || || || || || |||| Sbjct 65 TACGAGTTCCTCGCCAACGTCCATGACGAGTGGCAAATCGAAGTGGACGAGGACA 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142569096328160