Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq900588 630 2e-176 seq780762 91.5 4e-14 seq188012 82.4 2e-11 >seq900588 Length=4557 Score = 630 bits (698), Expect = 2e-176 Identities = 735/982 (75%), Gaps = 10/982 (1%) Strand=Plus/Plus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| |||| || || || || |||||||| ||||| ||||| || ||||||| | Sbjct 3007 ACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCC 3066 Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGT 18848 | | || ||| | || ||| | ||| || ||||| |||||||| ||||| ||||| || Sbjct 3067 C-TACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGT 3124 Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 ||| |||||||| || |||||||||||| | || | | |||||||||||||| || || Sbjct 3125 AGATATTGATGGTATTCGCGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 3184 Query 18909 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 18966 || || || | |||| | | || || |||||| | ||||| |||||||||||| Sbjct 3185 CTCTGGTGCTATTATTCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTTGG 3242 Query 18967 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19026 |||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 3243 GAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTA 3302 Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 19086 |||||| | |||| || | ||| ||||| || |||||||||||||| | || || Sbjct 3303 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 3362 Query 19087 GGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTC 19146 || ||||| ||||||||| |||||| || |||||||||||||| || || |||| || Sbjct 3363 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 3422 Query 19147 TTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGT 19206 ||| | | || || |||||||||| |||| || | ||||||||| || || | Sbjct 3423 TTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCT 3482 Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTC 19266 ||||| ||||||| ||| ||||||||||||| || || |||||||| ||||| || ||| Sbjct 3483 GGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTC 3542 Query 19267 CACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCG 19326 |||||| | ||||| |||||||| |||||||| || ||||| ||||| ||||| ||||| Sbjct 3543 CACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTC- 3601 Query 19327 CTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTA 19385 |||| || || | ||| | | |||||||||||| | | |||| || | || || Sbjct 3602 CTTGGTAACCTCTAGTTTGATCAGGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTA 3661 Query 19386 CAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCG 19445 ||| ||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||| || Sbjct 3662 CAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCG 3721 Query 19446 GCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGC 19505 | || ||||| || || |||||||| |||||| |||| ||||| |||||||| Sbjct 3722 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGC 3781 Query 19506 TTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTT 19565 ||||||||| || || || ||||| | || | || | || || ||||| |||||| | Sbjct 3782 TTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCT 3841 Query 19566 GAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTG 19625 ||||| || || || ||||| || | |||| | | ||||| || ||| ||||||| Sbjct 3842 AAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTG 3901 Query 19626 GGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCA 19685 |||||| || |||| ||||||||||| || | || ||||||||||||||||||||||| Sbjct 3902 GGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCACGAACGTAATGCTCA 3961 Query 19686 TAACTTCCCACTTGATTTGGCT 19707 |||||||| || || || ||| Sbjct 3962 CAACTTCCCTCTAGACTTAGCT 3983 >seq780762 Length=275 Score = 91.5 bits (100), Expect = 4e-14 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 19623 TTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGC 19682 ||||||||| || |||| ||||||||||| || | || |||||||||||||||||||| Sbjct 275 TTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCACGAACGTAATGC 216 Query 19683 TCATAACTTCCCACTTGATTTGGCT 19707 ||| |||||||| || || || ||| Sbjct 215 TCACAACTTCCCTCTAGACTTAGCT 191 >seq188012 Length=2438 Score = 82.4 bits (90), Expect = 2e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 19049 CTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTG 19108 |||| ||||| | |||||||||||||| | || || || ||||| ||||||||| || Sbjct 2349 CTTATATGGGTTGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTG 2408 Query 19109 TTGCCTACTCAGCTCCTGTTGCCGCAGC 19136 |||| || |||||||||||||| || || Sbjct 2409 TTGCATATTCAGCTCCTGTTGCAGCTGC 2436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137665942862058