Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq980070 123 3e-23 seq52972 98.7 1e-15 >seq980070 Length=1613 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 ||||||| | ||||||| ||||| ||| ||||| | |||| || || |||||||| Sbjct 416 AGGCCGGCCTGCTGGGCCATCATGTGGGTCAGCAGGGCGTAGGAAGCGATATTGAAGGGC 475 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 || || ||| ||||| | | |||||| |||||||| || |||| ||||||||| Sbjct 476 ACGCCGAGGAAGATGTCGGCGCTGCGCTGGTAGAGCTGGCAGGACAGCTTGCCGTCGGCC 535 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGG 147165 ||||| |||||| | | | |||||| ||||||||| ||| |||| ||| || | Sbjct 536 ACGTAGAACTGGAAGAAGGCGTGGCAGGGCGGCAGCTTCATCTGCGGCACGTCGGCCACG 595 Query 147166 TTCCAGGCCGAGACCACCAGCCG 147188 |||||||| ||||| | ||| || Sbjct 596 TTCCAGGCGGAGACGATCAGGCG 618 >seq52972 Length=254 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 146998 TGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCC 147057 || || ||||||| ||| |||| ||||||||| || ||||| | || || ||| Sbjct 2 TGCGCAACCATGTGCACGAGAAGCGCGTAGCTGGCAATCTTGAACCGCACGCCGAGGAAG 61 Query 147058 ATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGG 147117 || | | | |||||| ||||||||||| |||| ||||||||||| || |||||| Sbjct 62 ATATGGGCGCTGCGCTGGTAGAGCTGGCACGACAGCTTGCCGTCGGCCACATAGAACTGG 121 Query 147118 CACAGGATGTGGCACGGCGGCAGCGCCATG-GCGGGCAGGTCCGCGGGGTTCCAGGCCGA 147176 | | ||||| ||||||||| |||| ||||| | ||| || |||||||| || Sbjct 122 AAGAACGCATGGCAGGGCGGCAGCTTCATGCGCGGG-ATGTCGGCCACATTCCAGGCAGA 180 Query 147177 GACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCT 147214 || | |||||| | |||||||| | ||| |||| Sbjct 181 CACGATCAGCCGGCGCGAATCGGGGTTGCGCTTGATCT 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568332621266400