Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_026610.2 Length=56637 Score E Sequences producing significant alignments: (Bits) Value seq18005 143 9e-30 >seq18005 Length=1826 Score = 143 bits (158), Expect = 9e-30 Identities = 234/335 (70%), Gaps = 4/335 (1%) Strand=Plus/Plus Query 20450 GGCCTGCTTGAGACTCCTGCTCGCGTTCGCAAGGCTTGGGAGTTCTGG--TTCAAAGGCT 20507 ||||||| ||||| || || ||||| |||||| ||| || |||| ||| |||| Sbjct 96 GGCCTGCACGAGACCCCGGCGCGCGTCGCCAAGGCCTGGAAGCACTGGACTTCC--GGCT 153 Query 20508 ACCAACAAGATCCGGCTGCGCTGCTCAAAGTGTTCAAAGACGGGGCTGAGAAGTCTGACG 20567 || | || || |||| | | | ||||| | ||| |||| || || ||| | | ||| Sbjct 154 ACGAGCAGGACCCGGTCGAGATCCTCAAGGCCTTCGAAGATGGCGCCGAGGAATACAACG 213 Query 20568 AGATGGTGGTGGTCAAGGATATTCCATTCTTCTCCCATTGCGAACACCATATCGCACCGA 20627 || || | ||||| | || || ||| | ||||||||||||||| | || ||| Sbjct 214 AGCTGATCGTGGTGCGCGGCATCCCGGTCTACAGCCATTGCGAACACCACCTGGCGCCGT 273 Query 20628 TCATTGGTCTGGCCACAGTAGCCTACATCCCGAACGGGAAGATCGTCGGCCTGTCCAAGA 20687 || | || |||||| || | ||| | || || || || |||||||||||||| ||| Sbjct 274 TCTTCGGCAAGGCCACCGTCGGCTATTTGCCAAATGGAAAAATCGTCGGCCTGTCGAAGC 333 Query 20688 TCACGCGCTTGGTCGATGCCTTCGCCCGCCGCCTACAAGTGCAGGAGCGTTTGACCGATC 20747 | || ||| ||||||| | |||||| ||||| || ||||||||||| |||| | | Sbjct 334 TGACCCGCCTGGTCGACGTGTTCGCCAAGCGCCTGCAGGTGCAGGAGCGCCTGACGGTCC 393 Query 20748 AGATTGCGCAGACTATGGTGGACGAGCTGGAGCCG 20782 |||| || | || || |||| | |||||| ||| Sbjct 394 AGATCGCCAATACGCTGATGGAAGTGCTGGAACCG 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 176647729489438