Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq900588 600 1e-166 seq94777 491 5e-134 seq174834 116 4e-21 seq263076 111 2e-19 seq747441 95.1 1e-14 seq143040 89.7 6e-13 seq219505 87.8 2e-12 >seq900588 Length=4557 Score = 600 bits (664), Expect = 1e-166 Identities = 731/992 (74%), Gaps = 5/992 (1%) Strand=Plus/Plus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 |||||| | ||| ||||| || | || || || || |||| |||||||| || || Sbjct 3000 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 3059 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 181099 ||||| || || | ||| | |||||| ||||| || || |||||||| ||||||| || Sbjct 3060 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 3118 Query 181100 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 181159 || || || || || || || || || || || ||||||| | | ||||| ||||| Sbjct 3119 TCCAGTAGATATTGATGGTATTCGCGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 3178 Query 181160 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 181219 || ||||||||||| || |||| |||| || || || | ||||| || || || Sbjct 3179 TATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 3238 Query 181220 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 181279 |||||||| ||||| ||||||||||| | || || |||||||||| | || | || Sbjct 3239 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 3298 Query 181280 CTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACCG 181339 | |||||| | | || | | || ||||| ||||| |||||||| || ||| Sbjct 3299 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 3358 Query 181340 CTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGC 181399 | |||||||| || ||||| ||||||||| || ||||| || ||||| || |||| Sbjct 3359 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 3418 Query 181400 TGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCAT 181459 ||| ||| | | || ||| | |||||||| || ||||| | ||||| | || || Sbjct 3419 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAAT 3478 Query 181460 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCC 181519 ||||||||| ||||||| ||| |||| ||||| |||||||||||||| || |||||||| Sbjct 3479 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCC 3538 Query 181520 CTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGG 181579 ||||||||||| ||||| || |||||||| || ||||| || |||||||| ||||| || Sbjct 3539 ATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 3598 Query 181580 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGG 181639 ||| ||||| || ||| | || | || || ||||||| ||| || || | || Sbjct 3599 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACTACTGAAAATGAATCTGCTAATGAGGG 3658 Query 181640 TTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGG 181699 |||||| || || ||||| |||||||| || || || || || || || ||||| ||||| Sbjct 3659 TTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGG 3718 Query 181700 TCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 181759 || || ||||||||||||||| ||||||||||| ||||| | ||||||||| | || Sbjct 3719 CCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGC 3778 Query 181760 AGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAA 181819 || ||||||||||| |||||||||||||| || | || | || || ||||| || || Sbjct 3779 TGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 3838 Query 181820 CCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACAC 181879 ||| ||||| ||||| |||||||| ||| | | || | ||||| || || | || || Sbjct 3839 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATAC 3898 Query 181880 CTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGC 181939 ||||| || | |||||||||| || || |||||||| |||||||| || || || Sbjct 3899 TTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCACGAACGTAATGC 3958 Query 181940 GCACAACTTCCCGCTTGATCTTGCAGCAGCTG 181971 ||||||||||| || || ||| ||| |||| Sbjct 3959 TCACAACTTCCCTCTAGA-CTT--AGCTGCTG 3987 >seq94777 Length=2712 Score = 491 bits (544), Expect = 5e-134 Identities = 715/1005 (71%), Gaps = 4/1005 (0%) Strand=Plus/Plus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 |||| |||||| | | |||| || || || ||||| || |||||||| || | || Sbjct 1076 TGGATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCT 1135 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| ||||||| | || | || |||||| |||| |||||| ||||||| || || Sbjct 1136 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 1195 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCT 182549 |||| ||||| || | || ||||||| | |||||| ||| ||||||| | ||||| Sbjct 1196 GGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAA-TTTCTTAACCGCAGCA 1254 Query 182550 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 182609 || || || ||||| || | | | || ||| | | ||||| ||||| || || | Sbjct 1255 GTTTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCA 1314 Query 182610 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 182669 || || |||| || ||||| ||| | || || || |||| ||| || ||||||||| Sbjct 1315 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCAC 1374 Query 182670 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGG 182728 || || || || || || ||||||||| | | ||||||||||||||||| ||| || Sbjct 1375 GGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTG-TTCA 1433 Query 182729 AATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTT 182788 | | | ||||| ||||| || | || |||||||| |||||||| || || || || Sbjct 1434 ATTGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCGGTATT 1493 Query 182789 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 182848 ||| || ||||| |||| || || |||||| || |||||| ||||| || || || Sbjct 1494 CCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGC 1553 Query 182849 GATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCA 182908 ||| || | ||| | | ||| | || || || || || ||||| | ||||| || || Sbjct 1554 GATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCA 1613 Query 182909 TATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCAC 182968 ||||||||||||||| || || | || | || ||||| | ||||| ||||| | || Sbjct 1614 TATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAAC 1673 Query 182969 AGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTC 183028 ||||| || || | | ||| || || || ||||| || || || || | | Sbjct 1674 CGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCC 1733 Query 183029 CACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTT 183088 ||||| | || || || ||||| ||||| || || || || |||||||| |||||||| Sbjct 1734 AACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTT 1793 Query 183089 CGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCAT 183148 || ||||| ||| |||||| |||||||| || ||||||||| | ||||| || |||| Sbjct 1794 TGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCAC 1853 Query 183149 GGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGA 183208 ||| | ||| | | ||||||| | |||| | ||||| || | ||||| ||||| Sbjct 1854 CGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGA 1913 Query 183209 TTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAA 183268 ||||| || || || | ||||| ||||||||||| |||||||| |||||||| || Sbjct 1914 CTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTCGAGACTTTCTACACCAA 1973 Query 183269 GAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGA 183328 || || ||| | || || || | ||||| ||| ||||| || ||||| || ||||| Sbjct 1974 AAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGA 2033 Query 183329 AAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 ||| | || |||||||| || |||||||| | || ||||| || Sbjct 2034 AAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 2078 >seq174834 Length=1002 Score = 116 bits (128), Expect = 4e-21 Identities = 367/560 (66%), Gaps = 9/560 (2%) Strand=Plus/Minus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 |||| |||||| | | ||| || || | ||||| || |||| ||| || | || Sbjct 625 TGGATGACTGGTTACGAAGGGGCCGTTTCATTTTTGTAGGATGGTATGGCCTATTGCTCT 566 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTT--ACTGGGACAGCTTTTGTTACGAG 182488 |||| ||||||| || | || | |||||| || || || ||| ||| ||| || Sbjct 565 TTCCTTATGCTTAT-TTCTCTTTAGGGGTTGGTTTTTACAGGAACAACTTATGTAACTTC 507 Query 182489 TTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAG 182547 || ||| || || || || || ||||||| | |||| ||| ||||||| | || Sbjct 506 TTTGTATACTCATGGACTGGCAAGTTCCTATTTGCGAGGTTGTAA-TTTCTTAACAGCGA 448 Query 182548 CTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGT 182607 | | || || ||| || | | | || ||| | | ||||| ||||| || || Sbjct 447 CAATTTCTACCTTTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAG 388 Query 182608 CTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCC 182667 | || | |||| || ||||| ||| | || || || |||| ||| || || |||| Sbjct 387 CACATGTAGATTTTAGTCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCACTCC 328 Query 182668 ACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATT 182726 |||| || || || || || || |||||| | ||| |||||| |||||| ||| || Sbjct 327 ACGG-GCTTTTGCACTAATAGGGTTCATGTTACACCAACTTGAACGTGCTCGGTCTG-TT 270 Query 182727 GGAATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTG 182786 | | ||| ||||| || | || ||||||| |||||| | || || ||| Sbjct 269 CAATTGNNNNNTTATAATGCAATCTCATTCTCTGGTCTAATTGCTATTTTTGTTTCTGTA 210 Query 182787 TTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCG 182846 || || | ||||| | || || | |||||| || || ||| |||||||| || Sbjct 209 TTTCTTAGTTATCCACTCGG-CAATATGGTTGGTTCTTTGCACCGAGTTTTGGTGTAGCA 151 Query 182847 GCGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTC 182906 || || || | ||| | | ||| | || || || || || ||||| | || | || Sbjct 150 GCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAATCTATTT 91 Query 182907 CATATGATGGGAGTTGCTGG 182926 |||||||||||| |||| || Sbjct 90 CATATGATGGGATTTGCCGG 71 >seq263076 Length=554 Score = 111 bits (122), Expect = 2e-19 Identities = 196/289 (68%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 183072 TTTTGGTCACAAATCTTCGGGGTTGCGTTTAGC-AATAAGCGTTGGTTGCACTTCTTTAT 183130 |||||||| |||||||| || | || ||| | ||||| | |||||| || || ||||| Sbjct 553 TTTTGGTCCCAAATCTTTGGTGATGATTTTTTCCAATAAACCTTGGTTACATTTATTTAT 494 Query 183131 GTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCT 183190 | | ||||| ||||| || | ||| | ||| |||||| || ||| | ||||| Sbjct 493 GCTATTTGTAATTGTCACTAGTTTATGGATGACTTATATTGGCATAGTTGTCTTGGCTCT 434 Query 183191 TAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTT 183250 || | ||||| |||| || | ||| | ||||||||||| || Sbjct 433 GAACTTACGTGCCTATGNNNNNNNNNNNNNNNNNATCCGTGCAACGGAAGATCCTGAATT 374 Query 183251 CGAGACGTTCTAC-ACAAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCAC 183309 ||||| |||||| |||| || || | | ||||| | | ||||| | | |||||| Sbjct 373 TGAGACTTTCTACTCCAAAAAATATTTATTTGAATGAGAGTATTCGTGCGTAGATGGCAC 314 Query 183310 CTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACC 183358 || ||||| || |||||||| | || |||||||| || |||||||| Sbjct 313 CTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 265 >seq747441 Length=209 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 182665 TCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTC-GCCTG 182723 ||||||| || || || || || ||||||||| | | |||||||||||||||| | ||| Sbjct 1 TCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTG 60 Query 182724 ATTGGAATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGT 182783 || | | | ||||| ||||| || | || ||| |||| ||| ||| || || Sbjct 61 -TTCAATTGCGGCCTTATAATGCAATCTCATTCTCTCGTCCAATTTTTGTTTTTGTTTCG 119 Query 182784 GTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTC 182843 || ||||| || ||||| |||| || || |||||| || |||||| ||||| || Sbjct 120 GTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTA 179 Query 182844 GCGGCGATCTT 182854 || ||||| || Sbjct 180 GCAGCGATATT 190 >seq143040 Length=3997 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 182784 GTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTC 182843 || ||||| || ||||| |||| || || |||||| || || | | ||||| || Sbjct 3865 GTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACTGAGTTTTGGCGTA 3806 Query 182844 GCGGCGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCC 182903 ||||||| || | ||| | | ||| | || || || || || ||||| | ||||| Sbjct 3805 ACGGCGATATTTTGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 3746 Query 182904 TTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGG 182962 || ||||||||||||||||| || ||| | || | || ||||| | ||||| ||||| Sbjct 3745 TTTCATATGATGGGAGTTGCCGGAATATTAGGCGCGGCTCTGCTACGCGCTATTCATGG 3687 >seq219505 Length=1904 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 183166 CTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGA 183225 ||||||| | ||||| | || || || | |||| ||||| ||||| | || | Sbjct 1889 CTATTGGCGTAATTGGCTTGGCACTGAACTTATGTGCCTATGACTTTGTTTCCTAGGAAA 1830 Query 183226 TTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATG 183285 | | ||||| ||||||||||| | ||||| || ||||||| || || ||| | || | Sbjct 1829 TCTGTGCAGCGGAAGATCCTGAATATGAGACTTTTGACACAAAAAATATTCTTTTAAACG 1770 Query 183286 AAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTG 183345 | || | |||| ||| ||| | | | |||||||| |||||||| | || ||||||| Sbjct 1769 AGGGTATTCGTGTGTGGATGGAAGCCGAGGATCAACCTCATGAAAATCTTATATTCCCTG 1710 Query 183346 AAGAAGTTCTACC 183358 | || | ||| || Sbjct 1709 AGGAGGCTCTGCC 1697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 598653668429280