Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq900588 600 2e-166 seq94777 443 3e-119 seq174834 134 2e-26 seq143040 93.3 6e-14 seq219505 89.7 7e-13 >seq900588 Length=4557 Score = 600 bits (664), Expect = 2e-166 Identities = 714/966 (74%), Gaps = 2/966 (0%) Strand=Plus/Plus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 |||||||||||| |||| |||||||||||| | ||||| ||||| || || |||||||| Sbjct 3027 AATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 3086 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || |||||||| ||| | | ||| || ||||| || || || || || || || Sbjct 3087 -TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGCGA 3145 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 || || ||||||| | | ||||||||||| || ||||||||||| || |||||| Sbjct 3146 GCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTAC 3205 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 ||| || ||||| | ||||| |||||||| |||||||| || | | || || || Sbjct 3206 TTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTG 3265 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793 | | ||||| |||||||||| | ||| |||| | |||||| | ||||| | Sbjct 3266 GTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 3325 Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGT 174853 |||||||| |||||||||||||| || ||| | |||||| | |||||||| ||| Sbjct 3326 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 3385 Query 174854 AGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCA 174913 ||||| || || || |||||||| ||| | || || ||| | | || ||| | ||||| Sbjct 3386 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCA 3445 Query 174914 AGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGT 174973 ||| || || || | ||||| || || |||||||| || ||||||| ||| | || Sbjct 3446 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGT 3505 Query 174974 CTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGT 175033 ||||| ||||| || |||||| | ||||| || ||||||||||| || || || ||||| Sbjct 3506 ATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGGTGT 3565 Query 175034 CTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCG 175093 ||||| ||||| | ||| || ||||||||||| | || |||||| | || | Sbjct 3566 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 3625 Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153 || || ||||||| ||| || || | |||||||| || || ||||| |||||||| Sbjct 3626 GGAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGAC 3685 Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213 ||||| || ||||| || ||||| || || || || || ||||||||||| ||| || Sbjct 3686 TTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTT 3745 Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTT 175273 ||||||||| || || | ||||||||||| || || ||||| || || || |||||||| Sbjct 3746 CAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTT 3805 Query 175274 CACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTC 175333 ||| || | ||| || || ||||| |||||||| ||||||||||| |||||||| || Sbjct 3806 CACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 3865 Query 175334 TGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGG 175393 ||| | || | |||||| | || | || || ||||| ||| | | ||| | ||| Sbjct 3866 TGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAA 3925 Query 175394 TCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGCAGC 175453 ||||| |||||||||||||| || | ||||| ||||||||||| ||||| || || || Sbjct 3926 CCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACTTAGCTGC 3985 Query 175454 AGCTGA 175459 | ||| Sbjct 3986 TGTTGA 3991 >seq94777 Length=2712 Score = 443 bits (490), Expect = 3e-119 Identities = 705/1009 (70%), Gaps = 2/1009 (0%) Strand=Plus/Plus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||| | |||| |||||| | | || || | || | ||| | || |||||||| | Sbjct 1068 TGATACTATGGATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCT 1127 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||||||| | || | || || ||| |||| || ||||||||||| Sbjct 1128 ATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGT 1187 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032 || |||||| |||||||| | || ||||||| | || ||| ||| || | || Sbjct 1188 AACTTCTTGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAATTTCTTAAC 1247 Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092 || || || || || ||||| || | | | || ||| | | ||||| ||||| || Sbjct 1248 CGCAGCAGTTTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCC 1307 Query 176093 TGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGC 176152 ||| | || || || || || ||| ||| | || || || ||| | ||||| || Sbjct 1308 AGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGC 1367 Query 176153 TCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACT 176212 ||||||||| || || || || || || |||||| | || || |||||||| || | Sbjct 1368 TCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTC 1427 Query 176213 CATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAG 176272 || | || || || || || || ||||| |||||| || ||||| ||||| Sbjct 1428 TGTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTC 1487 Query 176273 TGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGT 176332 || || ||| | || ||||| || |||||| ||||||||||| || ||||| || Sbjct 1488 GGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 1547 Query 176333 GGCAGCAATCTTTAGATTCCTATTGTTTCTT-CAGGGTTTCCACAACTGGACACTGAACC 176391 ||||| || ||| ||||| | | |||||| || || || || || ||||| |||||| Sbjct 1548 AGCAGCGATATTTCGATTCATCCT-TTTCTTCCAAGGATTTCATAATTGGACGTTGAACC 1606 Query 176392 CCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATG 176451 | || ||||||||||||||||| || || |||| | || || |||| || || |||| Sbjct 1607 CATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATG 1666 Query 176452 GCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGT 176511 | | || || ||||| || |||| ||| || || || || |||||| ||| | Sbjct 1667 GAGCAACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGTGCTT 1726 Query 176512 TCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGC 176571 | | | || || | ||||| || ||||| ||||| ||||| |||||||| ||||| | Sbjct 1727 TTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCC 1786 Query 176572 AAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCC 176631 ||||||| || ||||| ||| ||||| |||||| | || ||||||||| | ||||| | Sbjct 1787 AAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTAC 1846 Query 176632 CTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTG 176691 | |||| ||| | ||| | ||||||| | |||| | ||||| || | |||| Sbjct 1847 CCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCTTGGCTCTGAACTTACGTG 1906 Query 176692 CTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCT 176751 | ||||| ||||| ||| || || | ||||| ||||||||||| || || ||||||| Sbjct 1907 CCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTCGAGACTTTCT 1966 Query 176752 ACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAAC 176811 |||| || || || ||| | ||||| || | | || ||||||||| || |||||| | Sbjct 1967 ACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGC 2026 Query 176812 CACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 | ||||| || ||||||| || || |||||||| | || ||||| Sbjct 2027 CTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 2075 >seq174834 Length=1002 Score = 134 bits (148), Expect = 2e-26 Identities = 381/577 (66%), Gaps = 9/577 (2%) Strand=Plus/Minus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||| | |||| |||||| | | || | | || || ||| | || |||| ||| | Sbjct 633 TGATACTATGGATGACTGGTTACGAAGGGGCCGTTTCATTTTTGTAGGATGGTATGGCCT 574 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTT--ACTGGCACAACTTTT 175970 | | || |||| ||||||| || | || | || ||| || || || ||||||| | Sbjct 573 ATTGCTCTTTCCTTATGCTTAT-TTCTCTTTAGGGGTTGGTTTTTACAGGAACAACTTAT 515 Query 175971 GTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTT-GAGGGTGCTAACTTTCT 176029 || || || ||| || ||||| || || ||||||| | |||| || ||| || | Sbjct 514 GTAACTTCTTTGTATACTCATGGACTGGCAAGTTCCTATTTGCGAGGTTG-TAATTTCTT 456 Query 176030 CACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 176089 |||||| | | || || ||| || | | | || ||| | | ||||| ||||| Sbjct 455 AACAGCGACAATTTCTACCTTTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGG 396 Query 176090 TCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGT 176149 || ||| | || | || || || ||| ||| | || || || ||| | ||||| Sbjct 395 GCCAGAAGCACATGTAGATTTTAGTCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGT 336 Query 176150 TGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAG 176209 || |||||||| || || || || || || |||||| | | || |||||| || | Sbjct 335 AGCACTCCACGG-GCTTTTGCACTAATAGGGTTCATGTTACACCAACTTGAACGTGCTCG 277 Query 176210 ACTCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGT 176269 || | || || || || ||||| ||||| || ||| | ||||| Sbjct 276 GTCTGTTCAATTGNNNNNTTATAATGCAATCTCATTCTCTGGTCTAATTGCTATTTTTGT 217 Query 176270 CAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGG 176329 ||| |||||| || ||||| || |||| | ||||||||||| || ||||| Sbjct 216 TTCTGTATTTCTTAGTTATCCACTCGG-CAATATGGTTGGTTCTTTGCACCGAGTTTTGG 158 Query 176330 TGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTC-AGGGTTTCCACAACTGGACACTGA 176388 ||| |||||||| ||| ||||| | | ||||||| | || || || || ||||| ||| Sbjct 157 TGTAGCAGCAATATTTCGATTCATCCT-TTTCTTCCAAGGATTTCATAATTGGACGTTGA 99 Query 176389 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGG 176425 | | || |||||||||||| |||| || || |||| Sbjct 98 ATCTATTTCATATGATGGGATTTGCCGGAGTATTAGG 62 >seq143040 Length=3997 Score = 93.3 bits (102), Expect = 6e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 176274 GTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTG 176333 || || ||| | || ||||| || |||||| ||||||||||| | ||||| || Sbjct 3865 GTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACTGAGTTTTGGCGTA 3806 Query 176334 GCAGCAATCTTTAGATTCCTATTGTTTCTTC-AGGGTTTCCACAACTGGACACTGAACCC 176392 | || || ||| ||||| | | ||||||| | || || || || ||||| ||||||| Sbjct 3805 ACGGCGATATTTTGATTCATCCT-TTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 3747 Query 176393 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGG 176452 || ||||||||||||||||| || ||| |||| | || || ||| || || ||||| Sbjct 3746 ATTTCATATGATGGGAGTTGCCGGAATATTAGGCGCGGCTCTGCTACGCGCTATTCATGG 3687 >seq219505 Length=1904 Score = 89.7 bits (98), Expect = 7e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 176657 TATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGAT 176716 ||||||| | ||||| | || || || | |||| ||||| ||||| | | || || Sbjct 1888 TATTGGCGTAATTGGCTTGGCACTGAACTTATGTGCCTATGACTTTGTTTCCTAGGAAAT 1829 Query 176717 TAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGA 176776 | ||||| ||||||||||| | ||| ||||| ||||||| || || ||| | ||||| Sbjct 1828 CTGTGCAGCGGAAGATCCTGAATATGAGACTTTTGACACAAAAAATATTCTTTTAAACGA 1769 Query 176777 AGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGA 176836 || | | | ||||||| | | | ||||||||| ||||| || ||||||| || Sbjct 1768 GGGTATTCGTGTGTGGATGGAAGCCGAGGATCAACCTCATGAAAATCTTATATTCCCTGA 1709 Query 176837 AGAAGTTCTACC 176848 || | ||| || Sbjct 1708 GGAGGCTCTGCC 1697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710970581927880