Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq900588 583 1e-161 seq94777 509 2e-139 seq174834 190 2e-43 seq143040 120 3e-22 seq124049 100 3e-16 seq2075000 89.7 6e-13 >seq900588 Length=4557 Score = 583 bits (646), Expect = 1e-161 Identities = 729/994 (73%), Gaps = 4/994 (0%) Strand=Plus/Plus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 |||||| | ||| ||||| || | || || || || |||| |||||||| || || Sbjct 3000 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 3059 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || || | ||| | ||||| ||||| || || |||||||| ||||||| || Sbjct 3060 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 3118 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 || || || || || || || || || || || ||||||| | | ||||| ||||| Sbjct 3119 TCCAGTAGATATTGATGGTATTCGCGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 3178 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 || ||||||||||| || | || |||| || || || | ||||| || || || Sbjct 3179 TATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 3238 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677 |||||||| ||||| ||||||||||| | || || |||||||||| | || | || Sbjct 3239 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 3298 Query 158678 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCG 158737 | |||||| | | || | | |||||||| ||||| ||||||||| | ||| Sbjct 3299 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 3358 Query 158738 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGC 158797 | |||||||| || ||||| ||| |||||||| || || || || || || |||| Sbjct 3359 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 3418 Query 158798 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158857 ||| ||| | | || ||| | |||||||| || || |||| ||||||| | || || Sbjct 3419 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAAT 3478 Query 158858 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158917 |||||||||||| |||| ||| |||||||||| ||||| ||||||||||||||||| || Sbjct 3479 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCC 3538 Query 158918 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158977 ||||| ||| | ||||| ||||| |||||||| || || || ||| |||||||||||| Sbjct 3539 ATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 3598 Query 158978 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTATG 159036 | || || || | | | || | ||||| ||||||| || || || | | Sbjct 3599 TTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACTACTGAAAATGAATCTGCTAATGAGG 3657 Query 159037 GTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCG 159096 ||||||| || || ||||| ||||| || |||||||| || || || |||||||| || | Sbjct 3658 GTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTTG 3717 Query 159097 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 159156 | || || ||||||||||| ||| ||||||||||| ||||| || ||||||||| | | Sbjct 3718 GCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGG 3777 Query 159157 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 159216 |||| |||||||| || || ||||||||||| || | || | || ||||| |||| Sbjct 3778 CTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 3837 Query 159217 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 159276 |||| || |||||||| |||||||| || | ||||| |||| ||||| || | || | Sbjct 3838 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATA 3897 Query 159277 CCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 159336 | ||||| ||| | | |||||||| || ||||||||||| ||||| || ||||| | Sbjct 3898 CTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCACGAACGTAATG 3957 Query 159337 CACACAACTTCCCACTCGACCTTGCTGCTGCTGA 159370 | ||||||||||| || ||| | ||||||| ||| Sbjct 3958 CTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 3991 >seq94777 Length=2712 Score = 509 bits (564), Expect = 2e-139 Identities = 721/1008 (72%), Gaps = 4/1008 (0%) Strand=Plus/Plus Query 159911 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTT 159970 || |||||| | | |||| |||||||||||||| || |||||||| || | || || Sbjct 1078 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 1137 Query 159971 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGG 160030 || ||||||| | ||| | || |||||| |||| || |||||||| | ||| ||| Sbjct 1138 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 1197 Query 160031 TATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTTA-CAGCGTCAGT 160089 |||||||||||| | || ||||||||| | || ||| || ||||||| | || |||| Sbjct 1198 TATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAA-TTTCTTAACCGCAGCAGT 1256 Query 160090 TAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCA 160149 | || || || | | | | || ||| | | || || ||||| || || || || Sbjct 1257 TTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCACA 1316 Query 160150 AGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGG 160209 ||| ||||| | ||| ||| | || || || |||| |||||| || ||||| || Sbjct 1317 AGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGG 1376 Query 160210 TGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTA 160268 || || || ||||| || |||||| | || || |||||||| || || ||| || | Sbjct 1377 GGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAAT- 1435 Query 160269 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCC 160328 | || ||||| ||||| || | ||||||||||| |||||||| ||||| ||||||| Sbjct 1436 TGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCGGTATTCC 1495 Query 160329 TCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 160388 | || || ||| |||| || || ||||||| || || ||| ||||| || ||||| | Sbjct 1496 TTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGA 1555 Query 160389 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATA 160448 | ||| ||||| | | ||| | ||||||||||| || |||||| | ||||| || |||| Sbjct 1556 TATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATA 1615 Query 160449 TGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTG 160508 ||||||||||||| || || |||| | || ||||| | || || ||||| | || | Sbjct 1616 TGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCG 1675 Query 160509 TAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGA 160568 |||| ||||| || | ||| || || || ||||||||||| || ||| | | | Sbjct 1676 TAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAA 1735 Query 160569 CACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 160628 | || | ||||| |||||||| ||||||||||| |||||||| ||||| || ||||| | Sbjct 1736 CTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTG 1795 Query 160629 GTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGG 160688 || |||| ||||| || || || ||| | ||||| || ||| | ||||| || || | | Sbjct 1796 GTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCG 1855 Query 160689 GTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATT 160748 || | |||| ||||||| | |||| | ||||| || | ||||| || || | Sbjct 1856 GTTTATGGATGAGTGCTATTGGCGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACT 1915 Query 160749 TCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGA 160808 | || || || || | ||||| |||||||| ||||| ||||| ||||||||||| | Sbjct 1916 TTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTCGAGACTTTCTACACCAAAA 1975 Query 160809 ACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGA 160868 | || || | || || || | ||||| ||| | ||| || || || || ||||| | Sbjct 1976 ATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAA 2035 Query 160869 ACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 | |||| ||||| || || ||||| || | || ||||| ||||||| Sbjct 2036 ATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 2083 >seq174834 Length=1002 Score = 190 bits (210), Expect = 2e-43 Identities = 391/569 (69%), Gaps = 13/569 (2%) Strand=Plus/Minus Query 159911 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTT 159970 || |||||| | | ||| |||||| ||||||| || |||| ||| || | || || Sbjct 623 GATGACTGGTTACGAAGGGGCCGTTTCATTTTTGTAGGATGGTATGGCCTATTGCTCTTT 564 Query 159971 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTT--ACTGGAACAACTTTCGCAACGAGCT 160028 || ||||||| | || | || |||||| || || |||||||||| | ||| | Sbjct 563 CCTTATGCTTATTTCTCTTTAGG-GGTTGGTTTTTACAGGAACAACTTATGTAACTTCTT 505 Query 160029 GGTATACCCATGGACTCGCTAGTTCCTATCTT-GAGGGTGCAAACTTTCTTA-CAGCGTC 160086 |||||| |||||||| || ||||||||| | |||| || || ||||||| ||||| | Sbjct 504 TGTATACTCATGGACTGGCAAGTTCCTATTTGCGAGGTTGTAA--TTTCTTAACAGCGAC 447 Query 160087 AGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGC 160146 | || || || | | | | || ||| | | || || ||||| || || || Sbjct 446 AATTTCTACCTTTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGC 387 Query 160147 TCAAGGGGATTTC-GTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCC 160205 || | ||||| ||| | ||| ||| | || || || |||| |||||| ||||||| Sbjct 386 ACATGTAGATTTTAGTC-GTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCACTCC 328 Query 160206 ATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATC 160264 | || || || || ||||| || |||||| | | || |||||| || || ||| || Sbjct 327 ACGG-GCTTTTGCACTAATAGGGTTCATGTTACACCAACTTGAACGTGCTCGGTCTGTTC 269 Query 160265 GGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTA 160324 | | ||| ||||| || | |||||||||| |||||| | ||||| ||| Sbjct 268 AAT-TGNNNNNTTATAATGCAATCTCATTCTCTGGTCTAATTGCTATTTTTGTTTCTGTA 210 Query 160325 TTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCA 160384 || || | || ||| | || || | ||||||| || || ||| ||||| || ||| Sbjct 209 TTTCTTAGTTATCCACTCGG-CAATATGGTTGGTTCTTTGCACCGAGTTTTGGTGTAGCA 151 Query 160385 GCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTC 160444 ||||| ||| ||||| | | ||| | ||||||||||| || |||||| | || | || Sbjct 150 GCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAATCTATTT 91 Query 160445 CATATGATGGGAGTTGCTGGTATACTAGG 160473 |||||||||||| |||| || || |||| Sbjct 90 CATATGATGGGATTTGCCGGAGTATTAGG 62 >seq143040 Length=3997 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 160322 GTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTG 160381 |||||||| || || ||| |||| || || ||||||| || || | | ||||| || Sbjct 3865 GTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACTGAGTTTTGGCGTA 3806 Query 160382 GCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCC 160441 | || || ||| ||||| | | ||| | ||||||||||| || |||||| | ||||| Sbjct 3805 ACGGCGATATTTTGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 3746 Query 160442 TTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGC 160501 || ||||||||||||||||| || ||| |||| | || ||||| | || || ||||| Sbjct 3745 TTTCATATGATGGGAGTTGCCGGAATATTAGGCGCGGCTCTGCTACGCGCTATTCATGGA 3686 Query 160502 GTTACTGTAGAGAACA 160517 | | ||||| |||| Sbjct 3685 GCAAACGTAGAAAACA 3670 >seq124049 Length=9620 Score = 100 bits (110), Expect = 3e-16 Identities = 236/348 (68%), Gaps = 14/348 (4%) Strand=Plus/Plus Query 160220 CTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTA 160278 ||||| || |||||| || |||||||| || || ||| || | | | ||||| Sbjct 9264 CTAATAGGTTTCATGNNNNNNCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCAACCTTA 9322 Query 160279 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCC 160338 ||||| || | ||||||||||| |||| | |||| |||||||| || | || Sbjct 9323 TAATGCAATCTCATTCTCTGGTCCAATTGTTACTTTTGCTTCTGTATTCCTTATTTGTCC 9382 Query 160339 ATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT----CTTTA 160394 | |||| || || ||| ||| || || | | ||||| ||| |||| |||| Sbjct 9383 ACTGGGGCAATCTGGTTAGTTCTTTGCGCTGAGTTTTGG---CGCAACAATGATACTTT- 9438 Query 160395 GATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGG 160454 ||||| | | ||| | ||||||||||| || ||| | | |||| || |||||||||| Sbjct 9439 GATTCATCCTTTTCTTCCAAGGATTTCATAA-TGGGAGTTGTACCCATTTCATATGATGG 9497 Query 160455 GAGTTGCTGGTATACTAGG-AGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAG 160513 || |||| || || |||| | ||| || || | || || ||||| | || |||| Sbjct 9498 GATTTGCCGGAGTATTAGGCATGAG-TCTTCTATGCGCTATTCATGGAGCAAC-CTAGAA 9555 Query 160514 AACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTT 160561 ||||| || | | | |||| || |||||||||||| | || ||| Sbjct 9556 AACACTCTATTTTAGGATGATGATGGTGCAAATACCTTTCATGCTTTT 9603 >seq2075000 Length=209 Score = 89.7 bits (98), Expect = 6e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 160214 TTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCG 160272 || || ||||| || |||||| | || || |||||||| || || ||| || | | || Sbjct 207 TTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCG 149 Query 160273 TCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCAT 160332 ||||| ||||| || | ||||||||||| ||| ||| || | ||||||| | Sbjct 148 GCCTTATAATGCAATCTCATTCTCTGGTCCAATTTTTGTTTTCATTTCTTTATTCCTTAG 89 Query 160333 CTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTT 160392 || ||| | || || || |||||||| || || ||| ||| || ||||| || || Sbjct 88 TTATCCACTAGGGCAATCTAGTTGGTTCTTTGCGCCGAGTTTTCATGTAGCAGCGATATT 29 Query 160393 TAGATTCCTGTTGTTCCTTCAAGGATTT 160420 | ||||| | | ||| | ||||||||| Sbjct 28 TTGATTCATTCTTTTCTTCCAAGGATTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538123781926080