Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq957357 113 6e-20 seq60244 84.2 3e-11 >seq957357 Length=1670 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||||| || | ||||||| ||| |||| | | ||| |||| || || Sbjct 1516 TCCTCCTTGATCTACATAACGAGCAGTGTCATTGAAGACACGTAACATAGGAACTATCCC 1457 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | ||||||||||| |||||| || || | || ||||| || || ||| Sbjct 1456 ATTGGATGTTCCATTTGTTCCTCGAATATAGCTCCCAGTAGCACGAATGTTGTGAACAGA 1397 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| || | |||||| || | || ||||| || Sbjct 1396 GACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTGAGAGTATCATAGAT 1337 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| |||||||||||| ||||| | ||| |||||||| Sbjct 1336 TCCCTCGATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 1295 >seq60244 Length=9325 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 746 GCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 805 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| || ||||| || ||||| ||| || || || || |||| Sbjct 806 GCCCGGCATGAGCCCCCGCTTCTTCAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 864 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 865 AGATGCCCTCGAC 877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669067193969640