Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq957357 113 6e-20
seq60244 84.2 3e-11
>seq957357
Length=1670
Score = 113 bits (124), Expect = 6e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| ||||||| || | ||||||| ||| |||| | | ||| |||| || ||
Sbjct 1516 TCCTCCTTGATCTACATAACGAGCAGTGTCATTGAAGACACGTAACATAGGAACTATCCC 1457
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||| ||| | ||||||||||| |||||| || || | || ||||| || || |||
Sbjct 1456 ATTGGATGTTCCATTTGTTCCTCGAATATAGCTCCCAGTAGCACGAATGTTGTGAACAGA 1397
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||| |||||||| || ||| || | |||||| || | || ||||| ||
Sbjct 1396 GACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTGAGAGTATCATAGAT 1337
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
||||| |||||||||||| ||||| | ||| ||||||||
Sbjct 1336 TCCCTCGATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 1295
>seq60244
Length=9325
Score = 84.2 bits (92), Expect = 3e-11
Identities = 100/133 (75%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
|||||||||||| || || |||||||| || | || | ||||| || || |||||
Sbjct 746 GCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 805
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734
|| ||||| || || ||||| || ||||| || ||||| ||| || || || || ||||
Sbjct 806 GCCCGGCATGAGCCCCCGCTTCTTCAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 864
Query 39735 AGATGCCTTCTAC 39747
||||||| || ||
Sbjct 865 AGATGCCCTCGAC 877
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 669067193969640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |