Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_027296.1 Length=53721 Score E Sequences producing significant alignments: (Bits) Value seq18005 98.7 3e-16 >seq18005 Length=1826 Score = 98.7 bits (108), Expect = 3e-16 Identities = 262/400 (66%), Gaps = 9/400 (2%) Strand=Plus/Minus Query 36319 CCCTGCTGGCAGATCCCACGGGACTCCATGCACATATGCCGGCATTTGAGCAAGACGCCG 36378 ||| || || ||| || ||| ||||||||||| || ||||| |||| | |||||| Sbjct 496 CCCGGCGTGCGGATGCCGCGGCTTTCCATGCACATGTGGCGGCACTTGATGACCACGCCG 437 Query 36379 ACGCCGCGCGGTTTGAGCTCGGATTCGAAAAGCGCGTTGGCGATCTGCACCGTCAATCGT 36438 ||| | ||||| ||| | ||| | |||| ||||||||||| ||||||| || Sbjct 436 ACGGCCTTCGGTTCCAGCAC---TTCCATCAGCGTATTGGCGATCTGGACCGTCAGGCGC 380 Query 36439 TCCTGAACCTGGAGGCGTCGAGCGAACACGTTAGCCACTCGGCTGAGTTTCGAAAGCCCA 36498 ||||| ||||| ||||| |||||||||| ||| ||| | || ||||| || || Sbjct 379 TCCTGCACCTGCAGGCGCTTGGCGAACACGTCGACCAGGCGGGTCAGCTTCGACAGGCCG 320 Query 36499 AGAACGCGCCCATCCGGAATGTAAGCAATAGTCGCCGTGCCGAAGATGTCGGCAAGGTGA 36558 | | |||| || | || | | || ||| ||||||||| || ||||| Sbjct 319 ACGATTTTTCCATTTGGCAAATAGCCGACGGTGGCCTTGCCGAAGAACGGCGCCAGGTGG 260 Query 36559 TGCTCGCATTTCGAATAGATCGGAATGTCCTTGACCAAGACCATCTCG------TCATAG 36612 || ||||| | |||| ||| ||| | |||| || || |||| || | | Sbjct 259 TGTTCGCAATGGCTGTAGACCGGGATGCCGCGCACCACGATCAGCTCGTTGTATTCCTCG 200 Query 36613 GCACCTTCCTCGAAAGACTTCATGAAGTCGGCGGCATCCTGGGTGTAACCCTCGCCCCAT 36672 || || || ||||| | ||| | || ||| | | ||||| ||| || ||| Sbjct 199 GCGCCATCTTCGAAGGCCTTGAGGATCTCGACCGGGTCCTGCTCGTAGCCGGAAGTCCAG 140 Query 36673 TTTTCCCACGCCTTGGCGAACCGTTCGGGGGTGTCGAGCA 36712 | | ||| |||||||||| || | ||||| ||| ||| Sbjct 139 TGCTTCCAGGCCTTGGCGACGCGCGCCGGGGTCTCGTGCA 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167546777543446