Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_027348.2 Length=73882 Score E Sequences producing significant alignments: (Bits) Value seq980070 154 7e-33 >seq980070 Length=1613 Score = 154 bits (170), Expect = 7e-33 Identities = 142/178 (80%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 21682 CTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATCGCCAG 21741 |||| | ||||| ||||||||||| ||||| ||||| |||||||||||||| ||||| Sbjct 517 CTGCCAGCTCTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCCTTCAATATCGCTTC 458 Query 21742 CTACGCGCTGCTGACGCACCTCATGGCGGCCA--CGGTCGGCATGCAGGCCGAGAAGTTC 21799 |||||| |||||||| ||| | ||||| ||| || |||| || | | | | ||| Sbjct 457 CTACGCCCTGCTGACCCACATGATGGC--CCAGCAGGCCGGCCTGGAAGTGGGCGACTTC 400 Query 21800 ATCTGGTCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCAGGCCAAGCAGC 21857 |||||| | ||||| ||||||||||||||||||||||||||||| |||| | ||| || Sbjct 399 ATCTGGACCGGCGGCGACTGCCACCTGTACTCGAACCACATGGAACAGGTCGAGCTGC 342 Score = 104 bits (114), Expect = 1e-17 Identities = 275/420 (65%), Gaps = 0/420 (0%) Strand=Plus/Minus Query 21120 ACCAGGGCGAGGGCAAGTCTGACCGCACTGGCACAGGCACCAAGTCCGTATTCGGTGCCC 21179 |||| |||| || |||| || ||||| || || ||||| ||||| ||||| || Sbjct 959 ACCATGGCGCGGTCAAGCTCGATCGCACCGGTACCGGCACGCGTTCCGTGTTCGGCTACC 900 Query 21180 AGATGGAATTCGATCTGCGTGAGGGCTTCCCCCTGCTCCAGAAGAAGACCACCCCCTTCA 21239 ||||| ||| | |||| || |||||||| ||| | || |||| | | | | Sbjct 899 AGATGCGCTTCAACCTGCAGGACGGCTTCCCGCTGGTGACGACCAAGAAGGTGCACCTGA 840 Query 21240 CCACGATCTTCACCGAGCTCTCGTGGATGATGCAGGGCCTGACCAATGTGAACTGGCTAC 21299 ||||| || || ||| ||| | || | || ||||||| | || || Sbjct 839 AGTCGATCATCCATGAACTCATCTGGTTCCTGAACGGTTCGACCAATATCGCCTACCTGA 780 Query 21300 AGCAAAAGGGCTGCCACATCTGGGACGAATGGGCTGGTCCTGATGGCGGCCTCGGCCCGA 21359 || |||| ||| | ||||||||||| ||||| | | ||| ||| ||||||| Sbjct 779 AGGAAAACGGCGTCTCGATCTGGGACGAGTGGGCCGACGAGAACGGCAACCTGGGCCCGA 720 Query 21360 TCTATGGTGCCCAGTGGCGCAGCATCCAAGGCCCCGATGGAAAGAACATCGACCAGCTGG 21419 |||| || ||||||||||||| | | ||| || || | ||||||||||| | Sbjct 719 TCTACGGCTACCAGTGGCGCAGCTGGCCGGCCCCGGACGGCCGGCACATCGACCAGGTCA 660 Query 21420 CCAAGGCACAAGAGCTGCTGCTGAACGACCCGGACAGCCGCCGCATCATCGTGAATGCCT 21479 | ||| | || | | | |||| | |||||| |||||| | ||||| |||| Sbjct 659 GCCAGGTGCTGGACCAGATCAGGAACAATCCGGACTCGCGCCGCCTGATCGTCTCCGCCT 600 Query 21480 GGAACGTGGCCGAGCTCGACCAGATGGCCCTGACACCGTGCCATGCGATGTTCCAGTTCT 21539 ||||||||||||| | |||||| ||| | || ||||| || | |||||||||| Sbjct 599 GGAACGTGGCCGACGTGCCGCAGATGAAGCTGCCGCCCTGCCACGCCTTCTTCCAGTTCT 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230313500701823