Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq980070 138 2e-27 >seq980070 Length=1613 Score = 138 bits (152), Expect = 2e-27 Identities = 199/281 (71%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 198329 CTTTCATGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATC 198388 || || || |||||||| || ||||| || || | |||||||||||||| ||||| ||| Sbjct 522 CTGTCCTGCCAGCTCTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCCTTCAATATC 463 Query 198389 GCGTCTTACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGAT 198448 || || ||||| | || |||||| | |||||||||| | ||| |||||| Sbjct 462 GCTTCCTACGCCCTGCTGACCCACATGATGGCCCAGCAGGCCGGCCTGGAAGTGGGCGAC 403 Query 198449 TTCATTTGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAGCTC 198508 ||||| ||||| ||||| ||| || || ||||| || || |||| |||| | |||| Sbjct 402 TTCATCTGGACCGGCGGCGACTGCCACCTGTACTCGAACCACATGGAACAGGTCGAGCTG 343 Query 198509 CAGCTGACGCGTGAGCCGTTACCTTTACCGAAACTGATCATCAAGCGTAAACCGGAATCT 198568 ||||| |||| || | || | || | ||| |||||||||| || || || || Sbjct 342 CAGCTCGCGCGCGAAGAGCGTCCGCTGCCCAGGCTGGTCATCAAGCGCAAGCCCGATTCG 283 Query 198569 ATCTTCGATTATAAATTCGAAGATTTTGAGATCGTTGGGTA 198609 | ||||| || | ||||| || || ||||| || || || Sbjct 282 CTGTTCGACTACAGGTTCGACGACTTCGAGATGGTCGGCTA 242 Score = 89.7 bits (98), Expect = 8e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 197668 CGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCG 197727 |||||| || || || || |||| ||| || || || ||||||||| || | ||| Sbjct 940 CGATCGCACCGGTACCGGCACGCGTTCCGTGTTCGGCTACCAGATGCGCTTCAACCTGCA 881 Query 197728 TAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACT 197787 | || |||||| | || ||||| ||||| | |||||| || || ||||||||||| Sbjct 880 GGACGGCTTCCCGCTGGTGACGACCAAGAAGGTGCACCTGAAGTCGATCATCCATGAACT 821 Query 197788 GCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCAT 197847 | |||||||| | || ||||| | | || ||| | || |||||||| | || Sbjct 820 CATCTGGTTCCTGAACGGTTCGACCAATATCGCCTACCTGAAGGAAAACGGCGTCTCGAT 761 Query 197848 TTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCC 197886 ||| |||||| || || || || ||||| ||||| Sbjct 760 CTGGGACGAGTGGGCCGACGAGAACGGCAACCTGGGCCC 722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 749214748117080