Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq102963 118 9e-22 seq11307 107 2e-18 seq138594 105 6e-18 seq362679 104 2e-17 seq1989185 102 7e-17 seq1978033 93.3 3e-14 seq878454 91.5 1e-13 seq260872 91.5 1e-13 seq232690 89.7 4e-13 seq19311 89.7 4e-13 seq117303 86.0 5e-12 seq1142613 82.4 6e-11 seq138792 82.4 6e-11 >seq102963 Length=6263 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||||||||| | || | |||| || | || || || || || || ||||||||| Sbjct 3515 GCCTCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 3456 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | |||| |||| |||||||| ||||||||| | ||||| ||||| || |||||||| Sbjct 3455 GAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 3396 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| || | | | || | ||||| | || || || Sbjct 3395 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCAC 3336 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||||||||| || ||||| ||||| ||||| Sbjct 3335 CTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 3288 >seq11307 Length=2396 Score = 107 bits (118), Expect = 2e-18 Identities = 169/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||| | || | || | || | || || || || || || |||||||| Sbjct 20 TGCCTCCGCGAAGACGGAGAACAAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCAG 79 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | | |||| |||||||| || || ||| | ||||||||||| || ||||||| Sbjct 80 CGAGGGTCCTCCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGCG 139 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| ||||| ||||||| || | | | || | ||||| | | || | Sbjct 140 GGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCCA 199 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAA 27258 | || || || || | ||||||||||| || ||||||||||| ||||| |||| || | Sbjct 200 CCTCAAGGGTGATGGTCTTGCCCGTCAGTGTCTTCACAAAGATCTGCAT--CTGCAAAGA 257 Query 27259 A 27259 | Sbjct 258 A 258 >seq138594 Length=2879 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | || || || || || || ||||||||| Sbjct 24 GCCACCGCGGAGTCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 83 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | |||| |||| |||||||| || |||||| | ||||| ||||| || |||||||| Sbjct 84 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 143 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| || | | | || | ||||| | | || || Sbjct 144 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCCAC 203 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||||||||| || ||||| ||||| ||||| Sbjct 204 CTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 251 >seq362679 Length=1828 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| | ||||||||||| |||||| Sbjct 1720 GTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCTTCGAGCTGCTTACCG 1661 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| || ||||| || | ||||| || || ||||||| || Sbjct 1660 GCGAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 1601 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || ||||| || || || || | ||||| || ||||| Sbjct 1600 ACGTTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTC 1541 Query 27231 TTCACAAAGATTTGCAT 27247 || ||||| || ||||| Sbjct 1540 TTAACAAATATCTGCAT 1524 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| | || || || || || || Sbjct 1492 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCCAGTTGCTTGCCA 1433 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 1432 GCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTA 1373 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| || || || || | ||||| || || || Sbjct 1372 ACGTTGTCGATCGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGTGTC 1313 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 1312 TTCACAAAGATCTGCAT 1296 >seq1989185 Length=2918 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | ||||| | || || ||||| || || Sbjct 2557 GTGGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGCCCATCCTCCAGCTGCTTGCCA 2616 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || |||||||| || ||||| || | ||||| || || ||||||| || Sbjct 2617 GCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 2676 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | |||||||| | ||||| || ||||| || | ||||| || || || Sbjct 2677 ACGTTGTCAATAGTGTCTGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTC 2736 Query 27231 TTCACAAAGATTTGCATAGCTGCT 27254 ||||||||||| |||||| || || Sbjct 2737 TTCACAAAGATCTGCATACCTCCT 2760 >seq1978033 Length=13150 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||||| ||||| || || ||||| || ||| | | ||||| | || || ||||| || || Sbjct 5251 GTAGACTCTTTCTGGATGTTGTAATCAGCT-AGGGTGCGCCCATCCTCAAGCTGCTTGCC 5193 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | || | ||||| || |||||||| | |||||| |||| ||||||| || Sbjct 5192 GGCAAAGATCAATCGCTGCTGGTCCGGCGGGATACCCTCCATATCCTGGATCTTGGCCTT 5133 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||| | | ||||| || || || || | ||||| || || || Sbjct 5132 GACGTTGTCAATCGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGT 5073 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 5072 CTTCACAAAGATCTGCAT 5055 >seq878454 Length=5435 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | |||| || | || || || || || || || ||||| Sbjct 834 TGCCTCCACGAAGCCTGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCAG 775 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | || |||||||| || ||||| | ||||| ||||| || ||||| | Sbjct 774 CCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGG 715 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || ||||| |||||| |||| | | || | ||||| | || || | Sbjct 714 GGATGCCTTCCTTATCCTGGATCTTTGCCTTCACGTTGTCGATGGTGTCAGAGGACTCCA 655 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || || | ||||||||||| || || || ||||| |||||| Sbjct 654 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATA 605 >seq260872 Length=904 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || | ||||||||| || |||| |||| || ||||| || || Sbjct 874 CGTCGACTCCTTCTGGACGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTCCC 815 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||| ||||| || |||||||| | ||||| || || ||||||| || Sbjct 814 GGCGAAGATGAGTCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTT 755 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||| || || || || || || || | ||||||||||| || Sbjct 754 GACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGGGTGATCGTCTTGCCCGTCAGGGT 695 Query 27230 TTTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 694 CTTGACGAAGATCTGCAT 677 >seq232690 Length=472 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 27069 TTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGT 27128 ||||||||| || |||| |||| || ||||| || |||||| | ||||| ||||| Sbjct 75 TTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGC 134 Query 27129 TGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCT 27188 || |||||||| | ||||| || || ||||||| || | | | || | ||||| Sbjct 135 TGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCG 194 Query 27189 GTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || || || | ||||||||||| || || || ||||| ||||| Sbjct 195 CTGCTCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 253 >seq19311 Length=2760 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || || |||||| || | |||| | || || ||||| || || Sbjct 2760 GTGGACTCCTTCTGGATGTTATAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 2701 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| || ||||| || | ||||| || || |||||| || Sbjct 2700 GCAAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTG 2641 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || ||||| || || || || | ||||| ||||| || Sbjct 2640 ACGTTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 2581 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 2580 TTCACAAAGATCTGCAT 2564 >seq117303 Length=1752 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 ||||| || |||| || | |||| || | ||||| || || || || |||||||| Sbjct 214 TTGCCACCACGCAGGCGAAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCT 155 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || |||| | || |||||||| || |||||| ||||||| ||||| || ||||| Sbjct 154 GCCAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCCGGA 95 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||| || || |||||| || | | | || | ||||| | || || Sbjct 94 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGAGGACTCC 35 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || || || || || | ||||||||||| || Sbjct 34 ACCTCCAGTGTGATGGTCTTGCCCGTCAGGGT 3 >seq1142613 Length=436 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| || | ||| | || || || || || || |||||||| | | | || | Sbjct 329 CGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCA 270 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||| || || || | ||||||||||| || ||||| || | ||||| || Sbjct 269 TCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTG 210 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | | || | ||||||| | ||||| || ||||| || Sbjct 209 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCTGAGCTCTCAACCTCCAGAGTGATG 150 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| || || || ||||||||||| ||||| Sbjct 149 GTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 115 >seq138792 Length=3226 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | ||||| || | || || || || ||||| |||||||| Sbjct 306 GCCACCGCGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGC 247 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | | || | || || ||||| ||||| || | ||||||||||| || ||||| || Sbjct 246 CAAGGTACGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGGGG 187 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || |||||| |||| | || | ||||| | | || || Sbjct 186 AATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCCGAAGACTCCAC 127 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | |||||||| || || || |||||||||||||| Sbjct 126 CTCCAATGTGATGGTCTTGCCCGTGAGGGTCTTTACAAAGATTTGCAT 79 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414173183445912