Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq835057 114 3e-21 seq138243 109 1e-19 seq7353 91.5 4e-14 >seq835057 Length=261 Score = 114 bits (126), Expect = 3e-21 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 9108 TCAGGGTCAGCCCAACACGTGCCGCCAAGAATTGCGCCCAGGCTCACCAGGTTGCGCAGG 9167 || ||||| ||| || ||||||| || || |||||| || || |||| ||||||| Sbjct 178 TCCGGGTCGATCCAGCAGTTGCCGCCGAGGATCGCGCCCTGGGTCTTCAGGCCGCGCAGG 119 Query 9168 TACGCGTTCACGCCTTCAATCACGTCATTGACGTATTGTTTGGTGATGCCACGGTCTACG 9227 | ||||| ||||| || |||||| | |||||| ||| ||||||| ||||| ||| Sbjct 118 AAGGCGTTGACGCCCTCGCGCACGTCGTCGACGTAGGTCTTGCTGATGCCGCGGTCGACG 59 Query 9228 GCCCACAGGTGTGCACGCAGCAGACTGTCATTGATGATGTCAGCCGTGCGAACCACGC 9285 |||||||| || || | || |||||| |||||||| |||||||| ||||||| Sbjct 58 GCCCACAGATGGGCGGCCTCGAGGCTGTCAGCAATGATGTCGGCCGTGCGCACCACGC 1 >seq138243 Length=1642 Score = 109 bits (120), Expect = 1e-19 Identities = 205/299 (69%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 41166 TCACTGAACAAAGTAGAAATCATTGGCAACTTAGGCAACGATCCAGAAATCCGTTACATG 41225 ||| | ||||| || ||| | |||||| | ||| |||||| |||||||| |||||| Sbjct 434 TCAGTCAACAAGGTCATCATCGTCGGCAACCTCGGCCGCGATCCGGAAATCCGCTACATG 375 Query 41226 CCAAGCGGCGGCGCGGTTGCTAATCTAAGCA-TCGCCACAACTGAAAGCTGGAAGGATAA 41284 || ||||||| ||| | || || | ||| | ||||| | | | | ||||| Sbjct 374 CCGAGCGGCGACGCCATCGCCAACATC-GCAGTGGCCACCTCGTACAAATCCAAGGACCG 316 Query 41285 AACCACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCT 41344 | |||||||||| ||||||||| || |||||||||||| | | ||||||| || Sbjct 315 CAACACCGGCGAGCAGAAAGAACTGACCGAATGGCACCGCATCTCCTTCTTCGGCCGTCT 256 Query 41345 GGCAGAAATTGCTAGCGAATACCTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCT 41404 || ||||| | || | |||||| |||||| | ||| | | | |||||| |||| Sbjct 255 CGCTGAAATCGTCGGCCAGTACCTGAAGAAAGGTTCCTCGGTCTACGTCGAAGGCCGCCT 196 Query 41405 GCGAACGCGTAAATGGCAGGACCAGGCTGGCGTTGATCGCTACACCACTGAAATCAACG 41463 || || || || | ||| ||| ||| | || |||||| |||| || |||| || Sbjct 195 GCAGACCCGCAAGTACACCGACAAGGACGGCATCGAACGCTACGCCACCGACATCATCG 137 >seq7353 Length=217 Score = 91.5 bits (100), Expect = 4e-14 Identities = 114/153 (75%), Gaps = 5/153 (3%) Strand=Plus/Plus Query 41308 AAACGGAATGGCACCGCGTTGTC-ATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATAC 41366 |||| ||||||||||| | |||| || ||||| ||| ||||||| || ||| | || ||| Sbjct 9 AAACCGAATGGCACCGTG-TGTCGATGTTCGGCAAGGTGGCAGAGATCGCTGGTGAGTAC 67 Query 41367 CTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGAC 41426 |||||||||||| |||| | ||| ||||||| |||| ||| || | || ||| Sbjct 68 CTGCGCAAAGGTTCGCAGGTCTACATCGAAGGCAAGCTGCAAACCCGCGAGTG---GGAA 124 Query 41427 CAGGCTGGCGTTGATCGCTACACCACTGAAATC 41459 | | ||| | | || ||||||||||||||| Sbjct 125 AAAGACGGCATCAAGCGTTACACCACTGAAATC 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129922643212536