Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq60244 127 3e-24 seq9471 91.5 2e-13 seq52215 82.4 9e-11 >seq60244 Length=9325 Score = 127 bits (140), Expect = 3e-24 Identities = 308/456 (68%), Gaps = 18/456 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || ||||| |||||||| |||||||| ||||| || | || ||| ||||| Sbjct 462 TACTCGCCGACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATGAGCTCCATC 521 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGG-GTGGCACCCCAACTTGTTTGAGGAGACG 122489 |||| || || || | ||||| | | || ||| |||| | | ||| || || Sbjct 522 CAGTCGAACGGGTTGGTGGCGTTGTACAGCTTGTTGCAGCCCAGCGCCAT-GAGCAGGCG 580 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 || | ||| |||| ||||||| | ||| || |||||| |||| ||| || Sbjct 581 GTCTGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 640 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 ||||| ||||| ||| |||| | ||||||| || || ||||| ||||| || Sbjct 641 GGGGAGCGCGTCGCAGACGAACTCCCTCTCAATGTCCACGGCCTCGGAGACGATCTCGAA 700 Query 122610 GATAGTTTCGGTAGTGGGTCTA--TTAC---GCA--AAGTCTT-GAAGAGCTCCACGGCA 122661 || ||| | | | || | || | ||| | ||| | || ||| || ||| Sbjct 701 GACG----CGGGACTCG-TCCAGCTTGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCG 752 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || ||| || ||||| || ||||| || || || || |||||| || || ||| Sbjct 753 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 812 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 ||||| ||||||||||||| ||| | || |||||||| || || ||||||||||| ||| Sbjct 813 ATGAGCCCCCGCTTCTTCAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 872 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || || || || | | ||| ||||||||| Sbjct 873 TCGACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 908 >seq9471 Length=4830 Score = 91.5 bits (100), Expect = 2e-13 Identities = 212/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 ||||| |||||||| ||||| | || ||||| || || || |||||||| || | | Sbjct 4143 AAGCCGTCCATCTCCGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCCCC-C 4201 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | ||| || |||| || ||| | || || || |||||||| || |||||||| || | Sbjct 4202 AC-CCATTCCCGCACCACGCTGCCTCCCGACGGCGTCAATCTCGTCGATGAAGACGATGC 4260 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | || || | ||| | || ||||| || | ||||| ||||||||| || | Sbjct 4261 AGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTCACCCTGGAGGCACCCACGCCGA 4320 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 | || | ||| || || | | || | ||| || ||| || || | || || | Sbjct 4321 CGAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGG 4380 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 ||| ||| |||||||| || ||||| || || || ||| || | || ||| || Sbjct 4381 CGACGGCACGGGCGAGCAGCGTCTTCCCGGTCCCGGGCGGGCCGACAAGCAGGCATCCCT 4440 Query 11838 GGGGGATCTTGGCACC 11853 |||||||||||| || Sbjct 4441 TGGGGATCTTGGCCCC 4456 >seq52215 Length=397 Score = 82.4 bits (90), Expect = 9e-11 Identities = 145/207 (70%), Gaps = 16/207 (8%) Strand=Plus/Plus Query 11537 TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT 11596 ||||| || ||||||||| || | || || | ||||||||| | ||| || || | Sbjct 44 TCAAAACCGTCCATCTCGACCAGAAGCTGGTTCAGTGTTTGTTCGCGCTCCTCGTTGCC- 102 Query 11597 GGCATACCAC---CAGCACT-GCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGAC 11652 || ||| | ||| || |||| ||| || | || |||| |||||||||||||| Sbjct 103 -GCCGACCGCATTCAGTGCTCGCGT--CTTTCCGAGTGCGTCAAGCTCATCAATGAAGAT 159 Query 11653 AATACATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCAC 11708 || || || ||| ||| || || | |||||||||||| |||| | |||| Sbjct 160 GATGCAGGGGGCTTTGGTTTCGGCTTGC----TTAAAGAGATCGCGGACCCGTGCTGCAC 215 Query 11709 CCACACCAACAAACATCTCCACAAAGT 11735 |||||||||| |||||||| || |||| Sbjct 216 CCACACCAACGAACATCTCGACGAAGT 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611719645989600