Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq60244 172 7e-38 seq9471 113 5e-20 seq17570 89.7 6e-13 seq69706 82.4 9e-11 >seq60244 Length=9325 Score = 172 bits (190), Expect = 7e-38 Identities = 319/455 (70%), Gaps = 16/455 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||||||||| || | || ||| |||||| Sbjct 462 TACTCGCCGACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATGAGCTCCATC 521 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA--TTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 | || || ||||| | | ||| | | ||| || || ||| | |||| || | Sbjct 522 CAGTCGAACGGGTTGGTGGCGTTGTACAGCTTGTTG-CAGCCCAG-CGCCATGAGCAGGC 579 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | ||| |||| ||||||| ||| ||| |||||| |||| ||| | Sbjct 580 GGTCTGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGC 639 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | ||||||||||| ||| |||| || ||||||||||||| || || ||||| || Sbjct 640 AGGGGAGCGCGTCGCAGACGAACTCCCTCTCAATGTCCACGGCCTCGGAGACGATCTCGA 699 Query 129966 GAATG---GTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAA 130019 | | | ||| || |||| | | ||||| | ||| | || ||| || ||| | Sbjct 700 AGACGCGGGACTC-GT-CCAGCT-TGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCGA 753 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | || ||| || |||||||| ||||||||||| || || |||||| || || |||| Sbjct 754 AGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCA 813 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 |||| ||||||||||||| |||||| || || || || ||||| ||||||||||| |||| Sbjct 814 TGAGCCCCCGCTTCTTCAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCT 873 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 | || || ||||| || | || ||||| || ||| Sbjct 874 CGACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 908 >seq9471 Length=4830 Score = 113 bits (124), Expect = 5e-20 Identities = 257/381 (67%), Gaps = 8/381 (2%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || ||||| || || ||||| ||||| || ||| |||||| | ||| Sbjct 4041 ACGGTGACCTGCCGATCGAACCGCCCTGGCCGGAGAAGCGCGGAGTCAAGCACATCCGGC 4100 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCC--GTCTCGTTATCAAAGCCATCCATCTCAG 14168 | ||| ||||| |||| || | || || || || | ||||| |||||||| | Sbjct 4101 CTGTTGGTCGCGGCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCG 4158 Query 14169 TCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACT 14226 | | || || || ||||| || || | ||||| ||| | || ||| ||||||| Sbjct 4159 TGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCCGCACC 4216 Query 14227 GCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACG 14286 || ||| | |||||||||||||| || |||||||| ||||| || || || | Sbjct 4217 ACGCTGCCTCCCGACGGCGTCAATCTCGTCGATGAAGACGATGCAGGGCGCCTTGGCCTT 4276 Query 14287 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 ||| || |||| || | ||| || |||||| || || || || | ||| || || Sbjct 4277 GGCCTTCTCGAAGAGGTCCCTCACCCTGGAGGCACCCACGCCGACGAAGAGCTCGACGAA 4336 Query 14347 ATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAG 14406 | | |||| || || |||||| || | || || |||| ||| |||||||| Sbjct 4337 CTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCACGGGCGAG 4396 Query 14407 GAGGGTCTTCCCCGTCCCTGG 14427 || |||||||| ||||| || Sbjct 4397 CAGCGTCTTCCCGGTCCCGGG 4417 >seq17570 Length=1015 Score = 89.7 bits (98), Expect = 6e-13 Identities = 232/351 (66%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 14078 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 14137 |||||||| || ||| |||| ||||| || |||||||| || ||||| || | || | Sbjct 2 GGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCGTGGCGGCGATCACGATGACG 61 Query 14138 CCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGT 14197 || | ||| ||||| ||||||||||| | || || || | || || ||||| Sbjct 62 CCGCTGTCGCCGCGGAAGCCGTCCATCTCAGTGAGCAGCTGGTTCAGCGTCTGCTCGCGC 121 Query 14198 TCATCATT-CGCAGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATC 14256 ||||| || | | || | |||| | ||| ||| ||||| ||||| || || || Sbjct 122 TCATCGTTGCCCCCGCCGA-TGCCCGTGCCGCGCTGCCGGCCGACTGCGTCGATCTCGTC 180 Query 14257 GATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTT 14316 |||||| || | || || || || ||| | || | || ||||| | | Sbjct 181 GATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAACAGGTCCCGCACCCGCGA 240 Query 14317 GGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGAC 14376 || || || ||||| |||||||| | || | | |||| | || |||||| || Sbjct 241 CGCGCCCACGCCCACGAACATCTCGATGAACTCCGACCCGGAGAGTGAGAAGAAGGGCAC 300 Query 14377 GTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | | || |||||||| || ||| || || |||||||||||||| || Sbjct 301 GCCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCCCGTCCCCGG 351 >seq69706 Length=5322 Score = 82.4 bits (90), Expect = 9e-11 Identities = 192/284 (68%), Gaps = 12/284 (4%) Strand=Plus/Minus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| ||||||||||||||||| || ||||||| || || || | |||||| ||| || Sbjct 1861 TCAAAACCATCCATCTCAGTCAACAGCTGATTGAGAGTCTGCTCCCTTTCATCGTTCCCA 1802 Query 14210 GGCATACC---ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 ||| ||| | | | |||| | || || || ||||||||||| | || || Sbjct 1801 ---CCACCGATACCTGTTCCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAACACT 1745 Query 14267 ATACATGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGA 14324 || || || ||| || ||| |||| |||| ||| || || | ||||| | Sbjct 1744 ATGCAAGGAGCATTCTCCTTGGC--CTTCTTGAAGAGATCACGAACACGGGATGCACCAA 1687 Query 14325 CACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGAT 14383 |||| |||||||||||||| || | || | | | || | || ||| || ||| || Sbjct 1686 CACCAACAAACATCTCCACGAACTCGGAACCCG-ATATCGAGAAGAATGGCACGCCAGCC 1628 Query 14384 TCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || ||||| || ||| || | ||||| || || || || Sbjct 1627 TCTCCTGCGATCGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGG 1584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602372110993560