Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq60244 136 4e-27 seq69706 104 3e-17 seq52215 95.1 1e-14 seq9471 95.1 1e-14 >seq60244 Length=9325 Score = 136 bits (150), Expect = 4e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| || |||| || || || || ||||| ||||||||||| || ||||| Sbjct 908 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 849 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | ||||| |||||||| || |||||||| || ||| |||||||||||| Sbjct 848 CTGCGCCATCTTCTGGCTGAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 789 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 788 GCTCATCTCCCGCGACGAGGGCCTGCAC 761 >seq69706 Length=5322 Score = 104 bits (114), Expect = 3e-17 Identities = 199/289 (69%), Gaps = 16/289 (6%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 1945 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 1886 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 | |||| || || || | ||||||||||||||||| ||||| || || || | | Sbjct 1885 ACAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAACAGCTGATTGAGA 1826 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 9700 || || |||| |||||| ||| | |||||| | ||| | |||| |||| Sbjct 1825 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTTCCA 1772 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AA 9758 || |||||||| ||||||| || || ||||| || ||| || | | | |||| | Sbjct 1771 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTTGA 1714 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 ||||||| || ||||| || || |||||||||||||||||||| || Sbjct 1713 AGAGATCACGAACACGGGATGCACCAACACCAACAAACATCTCCACGAA 1665 >seq52215 Length=397 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/209 (71%), Gaps = 16/209 (8%) Strand=Plus/Plus Query 9609 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9668 |||||||||| |||||||| || ||| ||||| | |||||||| || || || || Sbjct 42 TATCAAAACCGTCCATCTCGACCAGAAGCTGGTTCAGTGTTTGTTCGCGCTCCTCGTTGC 101 Query 9669 CTGGCATACCAC---CAGCACT-GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 9724 | || ||| | ||| || |||| |||||| | || |||| ||||||||||||| Sbjct 102 C--GCCGACCGCATTCAGTGCTCGCGT--CTTTCCGAGTGCGTCAAGCTCATCAATGAAG 157 Query 9725 ACGATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGC 9780 | |||||| || ||| ||| || || | ||||||||| || || || || Sbjct 158 ATGATGCAGGGGGCTTTGGTTTCGGCTTGC----TTAAAGAGATCGCGGACCCGTGCTGC 213 Query 9781 GCCCACACCAACAAACATCTCCACAAAGT 9809 ||||||||||| |||||||| || |||| Sbjct 214 ACCCACACCAACGAACATCTCGACGAAGT 242 >seq9471 Length=4830 Score = 95.1 bits (104), Expect = 1e-14 Identities = 249/374 (67%), Gaps = 16/374 (4%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || || ||||| || || |||||| ||||| | ||| | || |||||| Sbjct 4053 CGATCGAACCGCCCTGGCCGGAGAAGCGCGGAGTCAAGCACATCCGGCCTGTTGGTCGCG 4112 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| || | | ||| |||||| | || || |||||||| || | || |||| Sbjct 4113 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 4170 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699 |||| || || |||| ||||| ||| | || ||| || |||| || ||| | || Sbjct 4171 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCCGCACCACGCTGCCTCCC 4228 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 9755 ||||| |||||||| || |||||||||||||| || ||| || || | | Sbjct 4229 GACGGCGTCAATCTCGTCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----T 4284 Query 9756 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 9815 | ||||| |||| || | ||| ||||| || || || | ||| || || | | | Sbjct 4285 CGAAGAGGTCCCTCACCCTGGAGGCACCCACGCCGACGAAGAGCTCGACGAACTCAGACG 4344 Query 9816 CGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 9875 ||| || || |||||| || | || || || | ||| |||||||| || |||| Sbjct 4345 CGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCACGGGCGAGCAGCGTCT 4404 Query 9876 TACCCGTACCTGGC 9889 | || || || ||| Sbjct 4405 TCCCGGTCCCGGGC 4418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568111322505240