Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq60244 214 2e-50
>seq60244
Length=9325
Score = 214 bits (236), Expect = 2e-50
Identities = 588/877 (67%), Gaps = 37/877 (4%)
Strand=Plus/Minus
Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621
|| || || |||| |||| | | |||| | || ||||| ||| | | || ||||||
Sbjct 1321 TTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGG 1262
Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678
||| ||||||| | |||||| || ||| | | ||||||| | ||| ||
Sbjct 1261 ACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACGACTCTCTCCAAC 1202
Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738
||||||| || |||||| || || ||||||||||| || || || || |||
Sbjct 1201 GACGAGCGCCACTTCATCTCCCATGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTG 1142
Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAG---GATGTCCAGATTGCCGAGGCCCGGTCG 59795
| || || | | | | || || | || || ||| | ||||||||| || |
Sbjct 1141 CTCGAGAACCTCGCCTCCAGGTT---CATGTCTGACGTGCAGGTCGCCGAGGCCAGGGCT 1085
Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854
||||||| | ||| ||| || |||| ||||||||||||| ||||||||| | ||
Sbjct 1084 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCGCTGCTCAT 1026
Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914
|| | | || || | ||||||| | || ||||| ||||| || ||
Sbjct 1025 AGAGACCTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCAT 966
Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCA 59972
|||||| ||| | || || || |||||| | | ||||| || | | |||||
Sbjct 965 CCCCGCCGTTCGCCGCAAGGCCGACTGGGCCCTCCGCTGGATCGACGGCGGGGAGCGC-- 908
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032
|| || | || || | || || || ||||| || || ||||||||||| ||||| |||
Sbjct 907 TTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 848
Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092
|| || || |||||||| || ||||| || |||||||||||||| | ||||||||||||
Sbjct 847 TGCGCCATCTTCTGGCTGAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 788
Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACA-CC 60150
|| || ||||| ||||||||||| || || || || || | ||||| ||| ||
Sbjct 787 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGCCTCCTCTA-CGACATCC 730
Query 60151 T-ATTGGAAAAATG--CCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAA 60206
| || || || | ||| | | || | |||| || || | || | || ||
Sbjct 729 TGCGCGGCAAGCTGGACGAGTCC-CGCGTCTT--CGAGATCGTCTCCGAGGCCGTG-GAC 674
Query 60207 GTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGA 60266
| ||||| |||||| || || ||||| || ||| ||| | || ||| ||| |
Sbjct 673 ATTGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGAC 614
Query 60267 GAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAA 60323
|||| |||||||| |||| || || |||||| |||||||| | ||| |
Sbjct 613 CTCATGAGCCAGTACATCGAGTTCGTGGCAGACCGCCTGCTCATGGCGC----TGG-GCT 559
Query 60324 GGACCAA--TTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAG 60381
| | ||| | ||| || | ||||| ||||||||||||||| ||||||| || | |
Sbjct 558 GCAACAAGCTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGG 499
Query 60382 GGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418
| ||||| |||||||| |||||||| ||||| || ||
Sbjct 498 GCAAGACAAACTTCTTCGAGAAGCGCGTCGGCGAGTA 462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 534277547119440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |