Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq60244 214 2e-50 >seq60244 Length=9325 Score = 214 bits (236), Expect = 2e-50 Identities = 588/877 (67%), Gaps = 37/877 (4%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || |||| |||| | | |||| | || ||||| ||| | | || |||||| Sbjct 1321 TTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGG 1262 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678 ||| ||||||| | |||||| || ||| | | ||||||| | ||| || Sbjct 1261 ACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACGACTCTCTCCAAC 1202 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || |||||| || || ||||||||||| || || || || ||| Sbjct 1201 GACGAGCGCCACTTCATCTCCCATGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTG 1142 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAG---GATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | | | || || | || || ||| | ||||||||| || | Sbjct 1141 CTCGAGAACCTCGCCTCCAGGTT---CATGTCTGACGTGCAGGTCGCCGAGGCCAGGGCT 1085 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| ||||||||||||| ||||||||| | || Sbjct 1084 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCGCTGCTCAT 1026 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 || | | || || | ||||||| | || ||||| ||||| || || Sbjct 1025 AGAGACCTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCAT 966 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCA 59972 |||||| ||| | || || || |||||| | | ||||| || | | ||||| Sbjct 965 CCCCGCCGTTCGCCGCAAGGCCGACTGGGCCCTCCGCTGGATCGACGGCGGGGAGCGC-- 908 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || || | || || || ||||| || || ||||||||||| ||||| ||| Sbjct 907 TTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 848 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || |||||||| || ||||| || |||||||||||||| | |||||||||||| Sbjct 847 TGCGCCATCTTCTGGCTGAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 788 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACA-CC 60150 || || ||||| ||||||||||| || || || || || | ||||| ||| || Sbjct 787 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGCCTCCTCTA-CGACATCC 730 Query 60151 T-ATTGGAAAAATG--CCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAA 60206 | || || || | ||| | | || | |||| || || | || | || || Sbjct 729 TGCGCGGCAAGCTGGACGAGTCC-CGCGTCTT--CGAGATCGTCTCCGAGGCCGTG-GAC 674 Query 60207 GTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGA 60266 | ||||| |||||| || || ||||| || ||| ||| | || ||| ||| | Sbjct 673 ATTGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGAC 614 Query 60267 GAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAA 60323 |||| |||||||| |||| || || |||||| |||||||| | ||| | Sbjct 613 CTCATGAGCCAGTACATCGAGTTCGTGGCAGACCGCCTGCTCATGGCGC----TGG-GCT 559 Query 60324 GGACCAA--TTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAG 60381 | | ||| | ||| || | ||||| ||||||||||||||| ||||||| || | | Sbjct 558 GCAACAAGCTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGG 499 Query 60382 GGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | ||||| |||||||| |||||||| ||||| || || Sbjct 498 GCAAGACAAACTTCTTCGAGAAGCGCGTCGGCGAGTA 462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534277547119440