Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq60244 161 1e-34 seq18775 127 2e-24 seq120954 89.7 5e-13 seq15840 89.7 5e-13 seq1975922 87.8 2e-12 seq854216 87.8 2e-12 seq849829 87.8 2e-12 seq72182 87.8 2e-12 seq1985834 86.0 7e-12 seq862779 86.0 7e-12 seq856680 86.0 7e-12 seq843515 86.0 7e-12 seq99498 86.0 7e-12 seq68918 86.0 7e-12 seq16807 86.0 7e-12 seq10875 86.0 7e-12 seq8755 86.0 7e-12 >seq60244 Length=9325 Score = 161 bits (178), Expect = 1e-34 Identities = 510/772 (66%), Gaps = 25/772 (3%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| || || ||||| ||||| || | || ||||||| ||||||| Sbjct 462 TACTCGCCGACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATGAGCTCCATC 521 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAG---G 74579 |||||||| ||||| | || ||| | |||| | | | | |||||||| | Sbjct 522 CAGTCGAACGGGTTGGTGGCGTTGTACA---GCTTGTTGCAGCCCAGCGCCATGAGCAGG 578 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || ||||| || | |||||||| |||| | | | |||||||| ||| | Sbjct 579 CGGTCTGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCG 638 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG-GACAATCTT 74698 || || || || ||| || ||||| ||||| | || || | || | ||| |||| Sbjct 639 CAGGGGAGCGCGTCGCAGACGAACTCCCTCTCAATGTC-CACGGCCTCGGAGACGATCTC 697 Query 74699 GTGAATGTCTTTGGAAGGG--CACTTTTCC-CTCAGGTGAGAGTAAAGC-GTCACGGCAA 74754 | | | | ||| | || || || | |||| ||| || | || ||| | Sbjct 698 G---AAGACGCGGGACTCGTCCAGCTTGCCGCGCAGGATGTCGTAGAGGAGGCA-GGCGA 753 Query 74755 ACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 | || ||| ||| || || | | || | || || || || | ||||| |||| Sbjct 754 AGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCA 813 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | || || |||||||||| ||| |||||||| |||||||| || |||||||||||| | Sbjct 814 TGAGCCCCCGCTTCTTCAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCT 873 Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAA-CGGTGCATCGGAAGTC-ATCCAAGT 74932 |||| || || |||||||| | ||| | ||||| || | | | | ||| ||||| Sbjct 874 CGACGCAGGCGAAGGCGACGATGCGCTCGGCGAAGCGCTCC--CCGCCGTCGATCCAGCG 931 Query 74933 CTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCT 74992 | ||||| || || || || || || |||| || ||||| || ||||||||| Sbjct 932 GAGGGCCCAGTCGGCCTTGCGGCGAACGGCGGGGATGGTGTCGATGGCGCGGAAGAGGCG 991 Query 74993 TGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATG 75052 ||||||| || || || | | || || | || |||||| |||| || || Sbjct 992 GTCCTTCTCGACGTCGTCGCGGATGTAGGTCTCTATGAGCAGCGAGTACATCTCGGAGTG 1051 Query 75053 AATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACAT 75111 || |||| || ||| |||| | ||||||||| || ||||| || | ||| || | Sbjct 1052 GATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAAGCCCTGGCCTCGGCGACCTGCACGT 1110 Query 75112 CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAG 75171 | || | | ||| ||||| | ||||||||||| ||||||||||| || | Sbjct 1111 CAGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGG 1170 Query 75172 CCAGTACCATTTTGATAAAGTGGCGCTCATCGT--CAGTGAGT-TTGTCCCA 75220 | || || ||| ||||||||||| |||| || |||| ||||||| Sbjct 1171 CGAGCACATGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGAGTCGTGTCCCA 1222 >seq18775 Length=1994 Score = 127 bits (140), Expect = 2e-24 Identities = 221/318 (69%), Gaps = 5/318 (2%) Strand=Plus/Minus Query 158968 CCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCACATGGCCTCG 159027 || || || |||||| ||||||| || | ||| || ||||| |||||| |||| Sbjct 1522 CCGGTGGCGATCACATAGTCCTCGGGCTTGTCCTGCTGCAGCATCAGCCACTGCATCTCG 1463 Query 159028 ACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAGCTCGA--TGA 159085 || || || |||| || |||||||||||| ||||||||| ||| ||||| | || Sbjct 1462 ACATAGTCGCGCGCATGCCCCCAGTCGCGCATGGCATCCAGGTTGCCGAGGAAAAGCTG- 1404 Query 159086 CTTTTCCAGACTTTTTCCACTCA--GCCAGACCGAGCGTGATCTTGCGCGTCACAAACTC 159143 || ||||| | | | | ||||| ||| |||||||||| || || || || Sbjct 1403 CTGCTCCAGGCCCTGGGCGATGTTGGCCAGGCCGCGCGTGATCTTTCGGGTGACGAAGGT 1344 Query 159144 TGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCGAACAGGTTATA 159203 | | ||||| || || || ||||| ||||| |||||| | || || ||| | ||| Sbjct 1343 TTCGCCGCGGCGCGGGGATTCGTGGTTGAACAGGATGCCGTTGCAGGCATACATGCCATA 1284 Query 159204 GGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGGAGACGCCGTATGGACT 159263 || ||||||||||| || |||||||| | | ||||||| ||| |||| ||||| Sbjct 1283 GGCTTCGCGGTAATTGACCGTGATCCAGTAGGCGTACAGCTTGGCGACCGCGTAGGGACT 1224 Query 159264 CCGAGGATAAAATGGTGT 159281 || ||||| || || || Sbjct 1223 GCGCGGATAGAAAGGCGT 1206 >seq120954 Length=4361 Score = 89.7 bits (98), Expect = 5e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2347 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2288 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 2287 TGAGCTATGAAAGCAA 2272 >seq15840 Length=2416 Score = 89.7 bits (98), Expect = 5e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2197 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2138 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 2137 TGAGCTATGAAAGC 2124 >seq1975922 Length=2940 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 666 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 607 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 606 TGAGCTATGAAAGCA 592 >seq854216 Length=10905 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| ||||||| |||| |||| |||| ||||||||||||||||||||||||||| || Sbjct 5331 AGAGTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 5390 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| ||||||| |||||| Sbjct 5391 CAACTGAGCTATGAAAGC 5408 >seq849829 Length=3604 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2118 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2177 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 2178 TGAGCTATGAAAGCA 2192 >seq72182 Length=5440 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 5370 CTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 5311 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 5310 CTGAGCTATGAAAGC 5296 >seq1985834 Length=1559 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 433 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 492 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 493 TGAGCTATGAAAGC 506 >seq862779 Length=5268 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 257 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 198 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 197 TGAGCTACGAGAGC 184 >seq856680 Length=9579 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||| Sbjct 4563 GATTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 4504 Query 79681 AATTGAGCTACGAAAGC 79697 || ||||||| |||||| Sbjct 4503 AACTGAGCTATGAAAGC 4487 >seq843515 Length=3065 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1653 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1594 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 1593 TGAGCTATGAAAGC 1580 >seq99498 Length=19238 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||| Sbjct 14248 GAATGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 14189 Query 79681 AATTGAGCTACGAAAGC 79697 || ||||||| |||||| Sbjct 14188 AACTGAGCTATGAAAGC 14172 >seq68918 Length=4074 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1993 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1934 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 1933 TGAGCTATGAAAGC 1920 >seq16807 Length=3640 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1114 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1173 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 1174 TGAGCTATGAAAGC 1187 >seq10875 Length=6753 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 5639 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 5698 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 5699 TGAGCTATGAAAGC 5712 >seq8755 Length=4969 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4893 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4834 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 4833 TGAGCTATGAAAGC 4820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533002741579800