Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq27246 93.3 2e-14 >seq27246 Length=502 Score = 93.3 bits (102), Expect = 2e-14 Identities = 165/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 18145 GTAGGGGCCAAGAAATCGCACTCCGTTGAAGTGAATAAGATGAGAAGGTGCATCAGCCAC 18204 ||| || || || || ||| | ||||||||||| || || || | || |||||||| | Sbjct 363 GTAAGGCCCGAGGAACCGCTCACCGTTGAAGTGCATCAGGTGCGTGGGGGCATCAGCGGC 304 Query 18205 CCATACCTCTGTTTCCCATGCGATTTCACCAAGATATCGCCCCATGATGGAGCGATTTGG 18264 ||| |||| |||||||| || || || | ||||| | ||| ||| ||| | || Sbjct 303 CCAAGCCTCGGTTTCCCAAGCAATATCGGCCAGATACTTGCGCATCGTGGCGCGGTCAGG 244 Query 18265 AAAAGCGGTCACATAGACAAGTCCGGCTGTTGAT-CCGGCAAACAGCCTGGCAAGCTCAG 18323 || || | ||||||||| || || ||| ||| | | || || | ||||||| Sbjct 243 GAACGCCGACACATAGACCAGGCCAGCT-TTGCTGTCCTTGAAGAGTTTCTCAAGCTCTT 185 Query 18324 CATGCCGCTTCCCATCAACCGGTCCATGACTGGTGACAGACTCAACCAGTAGCAGCCA 18381 |||||||| ||||| ||||||||||| |||||| | || || |||||||| Sbjct 184 GGTGCCGCTTTCCATCTACCGGTCCATGTGAGGTGACCGCTTCGCAGAGCAGCAGCCA 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198282777119622