Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq948143 125 6e-24 seq839203 118 9e-22 seq362679 105 6e-18 seq138792 98.7 8e-16 seq139869 93.3 4e-14 seq95629 89.7 4e-13 seq548335 87.8 2e-12 seq1978033 86.0 5e-12 seq19311 86.0 5e-12 seq878454 84.2 2e-11 >seq948143 Length=1505 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| |||| |||||||| ||||| ||||| Sbjct 106 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAGGTGGAGTCGTCC 165 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || ||||| || ||||| || || || || Sbjct 166 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 225 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| || | ||| || | || |||||| Sbjct 226 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCGGACTACAAC 285 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||| | || |||| | || | || ||||| Sbjct 286 ATTCAGAAGGAGTCCACCCTTCACCTGGTGCTCCGCCTCCGTGGTGG 332 >seq839203 Length=7618 Score = 118 bits (130), Expect = 9e-22 Identities = 165/230 (72%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || |||||||| || || | ||| Sbjct 1136 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTTGAGTCTTCC 1077 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | |||||| || || || ||||| || ||||| || || || ||| Sbjct 1076 GACACGATCGACAATGTCAAAGCGAAGATCCAGGACAAGGAGGGCATCCC-CCGGACCAA 1018 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || ||||| ||| | || || || ||| | ||||||||||| Sbjct 1017 CAGCGGTTGATCTTTGCTGGCAAGCAACTTGAGGATGGTCGCACCCTAGCCGATTACAAC 958 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | || | ||| | || | || |||||||| Sbjct 957 ATCCAGAAAGAGTCCACTCTTCACCTAGTTCTCCGACTCCGTGGTGGCAT 908 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | || || | || |||||| | || Sbjct 910 CATGCAGATTTTCGTCAAGACCCTTACTGGCAAGACAATCACCTTGGAGGTGGAATCTTC 851 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||| | | || || ||| || || ||||| || ||||| || || || || Sbjct 850 AGACACCATTCACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 791 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||| || || | || || | || || | |||||||| Sbjct 790 GCAGCGCCTGATCTTCGCCGGTAAGCAGCTCGACGATGGCCGTACTCTTGCGGATTACAA 731 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||| |||||||| || | || ||||| | || | || |||||| Sbjct 730 CATTCAGAAGGAGTCTACACTCCACTTGGTGCTCCGCCTTCGTGGTGGC 682 >seq362679 Length=1828 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||||||||| || ||||| ||||||||| | || || || || || || | || Sbjct 1523 CATGCAGATATTTGTTAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTC 1582 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || || ||||| || ||||| || || || || Sbjct 1583 GGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 1642 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||| || || | ||||| | ||| | | || ||||| Sbjct 1643 GCAGCGTCTGATCTTCGCCGGTAAGCAGCTCGAAGATGGCCGCACCCTGGCGGACTACAA 1702 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | || | || | || | || |||||||| Sbjct 1703 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGGCTCCGTGGTGGCAT 1753 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||||||| | || || || || || || | || Sbjct 1296 ATGCAGATCTTTGTGAAGACACTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCT 1355 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || || ||||| || ||||| || || || || Sbjct 1356 GACACGATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 1415 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| ||| |||| || | ||| | | || |||||| Sbjct 1416 CAGCGTCTCATCTTCGCTGGCAAGCAACTGGAGGATGGCCGCACCTTGGCTGACTACAAC 1475 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || |||| | | | ||||||||||| Sbjct 1476 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCAGGCTCCGGGGTGGCAT 1525 >seq138792 Length=3226 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || |||||||| || || || |||||| | || || | || ||||| | || Sbjct 78 CATGCAAATCTTTGTAAAGACCCTCACGGGCAAGACCATCACATTGGAGGTGGAGTCTTC 137 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || ||| || || ||||| |||||||| || || || || Sbjct 138 GGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCA 197 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || || || || | || || | ||| | | || ||||| Sbjct 198 GCAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGTACCTTGGCGGACTACAA 257 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||| |||||||| ||| | || ||||| | ||| | || |||||| Sbjct 258 CATTCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTCCGCGGTGGC 306 >seq139869 Length=4701 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || | || || || | || Sbjct 545 ATGCAGATCTTCGTGAAGACACTCACCGGCAAGACCATCACCTTGGAGGTTGAGTCCTCG 604 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || ||||| || ||||| || || || || Sbjct 605 GACACCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 664 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || || | ||| || | ||||||||| Sbjct 665 CAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAAC 724 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || ||||| || ||| | || ||||| Sbjct 725 ATCCAGAAGGAATCCACCCTCCACTTGGT 753 >seq95629 Length=7091 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/226 (69%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| ||||| ||| | || ||| | || ||| | || Sbjct 3769 ATGCAGATCTTTGTGAAAACTCTTACCGGGAAGACCATAACTATAGAGGTGTAGAGTTCG 3710 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||| | || | |||| | | || ||||| || || || ||| | || ||| Sbjct 3709 GACAACATTGACAATGTAAGGCAAAGA-TCCAGGACAAGGAGGGTATCCCAGCAGACCAA 3651 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || | |||| ||||||| | ||| | | ||||||||| Sbjct 3650 CAGAGGCTTATCTTTGCTGCGGAACAGCTGGAAGATGGCCGCACCTTGGCTGATTACAAC 3591 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTG 27213 ||||| |||||||| ||| | || | ||| | || ||| |||||| Sbjct 3590 ATTCAGAAGGAGTCCACCCTCCACCTTGTTCTTCGGTTGAGGGGTG 3545 >seq548335 Length=209 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27006 ACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTC 27065 || || || |||||| | || || ||||| || || | || ||| | || || | ||| Sbjct 209 ACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACCATCGACAACGTC 150 Query 27066 AAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCC 27125 || ||| || || ||||| || ||||| || || || || ||||||||||| | ||| Sbjct 149 AAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTTTAATCTTCGCT 90 Query 27126 GGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACC 27185 ||||| || | || || | ||| || | || |||||||| || |||||||| ||| Sbjct 89 GGCAAGCAGCTCGAGGATGGCCGCACCCTTGCGGACTACAACATCCAGAAGGAGTCCACC 30 Query 27186 TTACATTTGGT 27196 | || |||| Sbjct 29 CTCCACCTGGT 19 >seq1978033 Length=13150 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||||||| | || || || || || || | || Sbjct 5055 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCT 5114 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| || || || || | || || || || || || || Sbjct 5115 GACACGATTGACAACGTCAAGGCCAAGATCCAGGATATGGAGGGTATCCCGCCGGACCAG 5174 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||||| || | || || | ||| | | ||||||||| Sbjct 5175 CAGCGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGCACCCTAGCTGATTACAAC 5234 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||| | || |||| | || | || ||||| || Sbjct 5235 ATCCAGAAAGAGTCTACCCTCCACCTGGTGCTCCGCCTCCGTGGTGGAAT 5284 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || |||||| | || || || || |||||| | || Sbjct 5283 ATGCAAATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAGGTGGAATCTTCG 5342 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| || ||||| || || || || Sbjct 5343 GACACCATTGACAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 5402 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || || || || | || || || || || | ||||||||| Sbjct 5403 CAGCGCCTGATCTTTGCAGGTAAGCAGCTTGAGGATGGTCGCACTCTTGCAGATTACAAC 5462 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| |||||||| || | || ||||| Sbjct 5463 ATTCAGAAGGAGTCTACTCTCCACTTGGT 5491 >seq19311 Length=2760 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||||||||||| | || || || || || || | || Sbjct 2564 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCG 2623 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || ||||| || || || || Sbjct 2624 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 2683 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || | || || | ||| | |||| || ||| Sbjct 2684 CAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCCGACTATAAC 2743 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 2744 ATCCAGAAGGAGTCCAC 2760 >seq878454 Length=5435 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | || || | || ||||| | || Sbjct 833 CATGCAGATTTTCGTGAAGACCCTCACAGGCAAGACCATCACCTTGGAGGTGGAGTCCTC 892 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || || || || ||||| || ||||| || || || || Sbjct 893 GGACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 952 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||||| || | || || | ||| | | |||||||| Sbjct 953 GCAGCGACTTATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCAGATTACAA 1012 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || |||||||| ||| | || |||| | || |||| |||||| Sbjct 1013 CATCCAGAAGGAGTCCACCCTTCACCTGGTGCTCCGCCTGCGTGGTGGC 1061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423907463414093