Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq55405 93.3 2e-14 seq27246 93.3 2e-14 >seq55405 Length=213 Score = 93.3 bits (102), Expect = 2e-14 Identities = 136/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 65227 AAACACCAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACCCAGGGC 65286 ||||||||||||| | ||| | || ||||| ||||| || ||| ||| ||||| || Sbjct 8 AAACACCAGATAGGACACTTCCGCCGATCCGACGACGATATGGGTGAAGTCGCCCAGCGC 67 Query 65287 AATAAGCCAGGTCATCAATATAATCA-CCACAATCTTTGCCGCACCCGCTGCA-GGAAAC 65344 || | |||| || | || || | |||| ||||| | ||| | | || | || | | Sbjct 68 CATGAAGTAGGTAATGAGGATGATGATCCAC-ATCTTCG-CGCTCTCCATGGACGGGATC 125 Query 65345 ATCCATACCATAGTGGCGATCAGCCAGCCGGAAATGATCGCGTTGGCAAACATCTCGCTG 65404 ||||| ||||| |||||||||| ||||||||| | ||| | ||||| ||||||| ||| Sbjct 126 ATCCAGACCATGGTGGCGATCATCCAGCCGGAGACGATGCCCTTGGCGAACATCTGACTG 185 Query 65405 GGGGTGT 65411 | | ||| Sbjct 186 GCGCTGT 192 >seq27246 Length=502 Score = 93.3 bits (102), Expect = 2e-14 Identities = 165/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 18202 GTAGGGGCCAAGAAATCGCACTCCGTTGAAGTGAATAAGATGAGAAGGTGCATCAGCCAC 18261 ||| || || || || ||| | ||||||||||| || || || | || |||||||| | Sbjct 363 GTAAGGCCCGAGGAACCGCTCACCGTTGAAGTGCATCAGGTGCGTGGGGGCATCAGCGGC 304 Query 18262 CCATACCTCTGTTTCCCATGCGATTTCACCAAGATATCGCCCCATGATGGAGCGATTTGG 18321 ||| |||| |||||||| || || || | ||||| | ||| ||| ||| | || Sbjct 303 CCAAGCCTCGGTTTCCCAAGCAATATCGGCCAGATACTTGCGCATCGTGGCGCGGTCAGG 244 Query 18322 AAAAGCGGTCACATAGACAAGTCCGGCTGTTGAT-CCGGCAAACAGCCTGGCAAGCTCAG 18380 || || | ||||||||| || || ||| ||| | | || || | ||||||| Sbjct 243 GAACGCCGACACATAGACCAGGCCAGCT-TTGCTGTCCTTGAAGAGTTTCTCAAGCTCTT 185 Query 18381 CATGCCGCTTCCCATCAACCGGTCCATGACTGGTGACAGACTCAACCAGTAGCAGCCA 18438 |||||||| ||||| ||||||||||| |||||| | || || |||||||| Sbjct 184 GGTGCCGCTTTCCATCTACCGGTCCATGTGAGGTGACCGCTTCGCAGAGCAGCAGCCA 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 205589490029676