Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq2072468 295 3e-75 seq18368 174 6e-39 seq138243 140 1e-28 seq834123 129 2e-25 seq28707 125 3e-24 seq1975374 109 2e-19 seq7353 104 9e-18 seq51957 93.3 2e-14 seq837208 84.2 8e-12 seq30077 84.2 8e-12 >seq2072468 Length=291 Score = 295 bits (326), Expect = 3e-75 Identities = 237/286 (83%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 24291 ACTGTGACAGCCGGAATGTTGCTGAACTGCTCTGCGCTGAACTCGACGTACAGCAGGGCC 24350 || || ||||||||||||||| ||||||| || ||| ||| |||| ||| ||||| || Sbjct 6 ACGGTTACAGCCGGAATGTTGGTGAACTGTTCAGCGTCGAATTCGATGTAGAGCAGCGCA 65 Query 24351 GTGTTCGGGTAGCGCAGCTTCGCGTCGATCACCTCGGTGTAGCCGGCGATCAGCATGGTG 24410 || ||||| ||||||||||| |||||||| ||||| ||| | ||||| | |||||||||| Sbjct 66 GTATTCGGATAGCGCAGCTTGGCGTCGATGACCTCTGTGCAACCGGCCACCAGCATGGTG 125 Query 24411 TCGGCGATGCGGTTGTTGTTCTGGTTCGGCGTCAGGCGGCGGACGCGCACCTGCCAGCCA 24470 |||||||| |||| ||||||||||||||||||||||||| ||||| | |||||||||| Sbjct 126 TCGGCGATCTTGTTGGTGTTCTGGTTCGGCGTCAGGCGGCGCACGCGTATCTGCCAGCCA 185 Query 24471 TTGGTGGCCGCCGGCAGGTCGATCCGGCGGGAACGCTCGTAGCGGGTGGTGGTCTTGCCA 24530 ||||||| |||||| ||||| || | || ||||||||||| |||||||||||||| Sbjct 186 GTGGTGGCGTCCGGCAAATCGATGCGAAGCGAGCGCTCGTAGCGCGTGGTGGTCTTGCCG 245 Query 24531 TCGACGGCCTCGCGCAGCACCTCCTGATAGGCGCCGCCGTCGGTGG 24576 ||||| || || | |||||| |||||||||||| || ||||||| Sbjct 246 TCGACTGCGTCCACCGGCACCTGCTGATAGGCGCCTCCATCGGTGG 291 >seq18368 Length=1007 Score = 174 bits (192), Expect = 6e-39 Identities = 237/329 (72%), Gaps = 14/329 (4%) Strand=Plus/Plus Query 7282 GTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCC 7341 || ||||| ||||| | || || ||| |||||| ||| |||||||| || ||||||||| Sbjct 172 GTCAACAAGGTCATCATCGTGGGCAACCTCGGTGCTGATCCGGAAACACGTTACATGCCC 231 Query 7342 AACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAG 7401 | ||| | ||||| ||||||||| | | || |||| ||| ||| ||||||||| Sbjct 232 AGTGGCGACGCGGTCACCAACATCCGCGTGGCAACCACCGATCGCTTTAAGGACAAGGGT 291 Query 7402 ACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCCTGGCG 7461 | ||| || | ||| | |||| | || ||| | | ||||||||||||| ||||| Sbjct 292 AGCGGTGAGATGCGCGAAGCCACCGAATGGCATCGCATCGCGTTCTTCGGTCGCTTGGCG 351 Query 7462 GAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCCTGCGC 7521 || ||||| |||||||| ||| ||||| || ||||||| |||| || | ||| Sbjct 352 GAAATCGCTGGCGAGTATCTGAAGAAGGGATCGTCGGTCTACATCGAGGGTCGTCTGAAA 411 Query 7522 ACCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAATCGTCGAC 7581 ||||| | ||| || | ||||||||| | | ||||| ||||||| || |||| Sbjct 412 ACCCGTCAATGGGAG---AAAGACGGCCAGAAGCAATACAGCACCGAG---ATTGTCG-- 463 Query 7582 ATGCACGGA-CAGATGCAGATGCTTGGCG 7609 |||| ||||||||||||||||||| Sbjct 464 -----CGGAGCAGATGCAGATGCTTGGCG 487 >seq138243 Length=1642 Score = 140 bits (154), Expect = 1e-28 Identities = 208/295 (71%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 7282 GTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCC 7341 || ||||| ||||| | || || ||| |||| | || ||||||| |||||||||||| Sbjct 431 GTCAACAAGGTCATCATCGTCGGCAACCTCGGCCGCGATCCGGAAATCCGCTACATGCCG 372 Query 7342 AACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAG 7401 | |||| | || | |||||||| | | |||||| | | | |||||| | Sbjct 371 AGCGGCGACGCCATCGCCAACATCGCAGTGGCCACCTCGTACAAATCCAAGGACCGCAAC 312 Query 7402 ACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCCTGGCG 7461 |||||| |||| | |||| |||| | |||||| | |||||||| || || || Sbjct 311 ACCGGCGAGCAGAAAGAACTGACCGAATGGCACCGCATCTCCTTCTTCGGCCGTCTCGCT 252 Query 7462 GAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCCTGCGC 7521 || |||| |||| |||||||| || |||||| |||||||||||||||| |||||| Sbjct 251 GAAATCGTCGGCCAGTACCTGAAGAAAGGTTCCTCGGTCTACGTCGAAGGCCGCCTGCAG 192 Query 7522 ACCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAATCG 7576 |||||||||| | |||||||| || || ||| ||||||| | |||| Sbjct 191 ACCCGCAAGTACACCGACAAGGACGGCATCGAACGCTACGCCACCGACATCATCG 137 >seq834123 Length=218 Score = 129 bits (142), Expect = 2e-25 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 22864 CCGGCGGC-GCGCCGGTCTTGCCGCTGAGTTGGGTCAGGATCGAACTCTTCCAGACCGAC 22922 ||||||| || || | ||| |||||||| | |||||||||||| | ||| ||| Sbjct 218 CCGGCGGTAGCCCCTG-CTTACCGCTGAGGTTGGTCAGGATCGAGTTGCGCCACGGTGAC 160 Query 22923 GTGATGTCGAAGGCCGACACCGCACGCACTCGCGCCAGATAGCCACCTGCGTAGATGCCG 22982 ||||||||||| || |||||| || || || |||| ||| |||| |||| ||| ||| Sbjct 159 GTGATGTCGAACGCGCTCACCGCGCGAACGCGGGCCACGTAGGCACCAGCGTCGATACCG 100 Query 22983 GTCACATCGACGCTGGTTGTGCCGGCACGCGGCAGGCGGATCCAGTTGCCGCTATCCTTC 23042 ||| || ||| |||| | |||| |||| |||| ||||||||||||||| ||||| Sbjct 99 CCCACGTCAACGTTGGTCATCCCGGTACGCTGCAGCTTGATCCAGTTGCCGCTGTCCTTG 40 Query 23043 TTCCACTCGACGTCGTATGCCACCGCCCCTTCTACAGC 23080 ||| || |||||||| | ||||| || || || || Sbjct 39 CGCCATTCAACGTCGTAGCCGACCGCGCCATCCACGGC 2 >seq28707 Length=214 Score = 125 bits (138), Expect = 3e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 45546 TTCACATAGACGTCACCGCACTCCTTGGCCGCCTGTTCCAACAACTGGGCGGTCAGCGCT 45605 || || |||||||| ||| ||||| || ||||| || | | ||| || || | Sbjct 212 TTGACGTAGACGTCGCCGACTTCCTTCGCGGCCTGCTCGAGGATCTGCATGGCGAGGCCG 153 Query 45606 AGGTTCCTCATGGACTCGGCCTTTTCGGCCATCCGCCCCAGCGTTCGAAGCCGGAACGCC 45665 | |||| |||| | ||||||| ||| | | || || | ||||||||||| || Sbjct 152 ATGTTCTTCATCGTCTCGGCCCGCTCGACAAAACGGTTCATGGCGCGAAGCCGGAATGCT 93 Query 45666 CGGTTGGCGATAGGGATCTCGGACGTCTCTTCGCGAAAGCGCTTGCGGGTGTCCTCGAAC 45725 ||||||||||| |||||||| | |||||||| |||||||||||||||| || || ||| Sbjct 92 CGGTTGGCGATCGGGATCTCTGCGGTCTCTTCACGAAAGCGCTTGCGGGCATCTTCAAAC 33 Query 45726 AGAGTCCGCCAGCGCTTGGCCAGGTCT 45752 | ||| |||||||||||||||| || Sbjct 32 ATCGTCACCCAGCGCTTGGCCAGGCCT 6 >seq1975374 Length=208 Score = 109 bits (120), Expect = 2e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 46071 CGACGAACTCATTCACGTCATGCCCGCGCAAGTAGAGGCTCGGCATCCCGTCCGAGCTGA 46130 |||||||||| | ||||| || ||||||| | || | |||| || || | ||| Sbjct 1 CGACGAACTCTTCAACGTCGTGTCCGCGCATCTCAAGCTTGGGCAGTCCTTCTTGGGTGA 60 Query 46131 ATTTTGGCGCGCCGAACTCGTCTGTCTTCTGGGCTATGTGAAATAGTTCATGCTCCAAAA 46190 | || || |||||| | | || | ||| || |||||||||| || ||||||| | Sbjct 61 ACTTGGGAGCGCCGTATTGATCCTTGGCCTGAGCGATGTGAAATAACTCGTGCTCCACCA 120 Query 46191 GCGAGCAAAACTCCACGTCCGAACACTGCGAGCAGTAGTCAGCCGCCAGGGTGATGAGGA 46250 ||| ||| || || |||| ||||| | |||||||||||| |||| |||||||| || Sbjct 121 GCGCGCAGAAGTCAGCGTCGGAACAGGCGGCGCAGTAGTCAGCAGCCAAGGTGATGATGA 180 Query 46251 AGTCCGGCTCTTCACCAAACCATTC 46275 || ||||| | || || ||||| || Sbjct 181 AGGCCGGCACGTCGCCGAACCAATC 205 >seq7353 Length=217 Score = 104 bits (114), Expect = 9e-18 Identities = 135/186 (73%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 7424 CCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCCTGGCGGAGATCGCCGGCGAGTACCTGC 7483 |||| | ||||| ||| | | ||||| |||| |||||||| || |||||||||| Sbjct 12 CCGAATGGCACCGTGTGTCGATGTTCGGCAAGGTGGCAGAGATCGCTGGTGAGTACCTGC 71 Query 7484 GCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCCTGCGCACCCGCAAGTGGCAGGCTCAGG 7543 |||| ||||| ||||||||| ||||||||| |||| |||||| |||| || | | Sbjct 72 GCAAAGGTTCGCAGGTCTACATCGAAGGCAAGCTGCAAACCCGCGAGTG---GGAAAAAG 128 Query 7544 ACGGCCAGGACCGATACACCACCGAGGTAATCGTCGACATGCACGGACAGATGCAGATGC 7603 ||||| | || |||||||| || | | ||||||||||| || ||||| ||| Sbjct 129 ACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCACCATGCAACTGC 188 Query 7604 TTGGCG 7609 | |||| Sbjct 189 TGGGCG 194 >seq51957 Length=242 Score = 93.3 bits (102), Expect = 2e-14 Identities = 145/201 (72%), Gaps = 11/201 (5%) Strand=Plus/Plus Query 18060 CGCTGCAAATTCAGCGGTCGGGCTTGGCCGCCCGAATCGGTAAGGCGCACAGCGCCGC-- 18117 |||||| || ||||| || ||||||| |||| | || | | ||||||||| ||||| Sbjct 46 CGCTGCTCAT-CAGCGATCAGGCTTGGTCGCCTGGATTAGAATGGCGCACAGTGCCGCGC 104 Query 18118 -AG-GGCGtttttttGTGCCCTCGCTTTATGGCGGGCTGTGCGTGGGACACCTT-CGGGT 18174 || ||| || || ||| |||| ||||| || ||||||||||||| ||| ||| Sbjct 105 AAGCGGCATTATTGTGT----TCGCGTTATGACGAGCTGTGCGTGGGAGGGCTTACGGCC 160 Query 18175 GTGCCGGGAGCCTTACCCCCGGTCGGCCAACCCGCGTACAGTTCGCCTCC-CTCTTCTTG 18233 |||||| | ||| ||||| |||||| |||||||| ||||| || || |||| Sbjct 161 CTGCCGGATTTCCATTCCCTGGTCGACCAACCTGCGTACAGCTCGCCGCCTTTCCGCTTG 220 Query 18234 GTCGCAGAGATGGCGAACTcc 18254 ||||| || ||| || |||| Sbjct 221 GTCGCGGATGTGGTGAGCTCC 241 >seq837208 Length=202 Score = 84.2 bits (92), Expect = 8e-12 Identities = 134/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 23090 GATGGTCATCGTGCTGACCGCCAACCCCTGATCGAACTGGT--AGTGCGAGGTCAGCGTG 23147 ||| ||||| ||| || |||| |||||| | | | | | ||| ||| | ||||| Sbjct 201 GATTGTCATGGTGGCCACGGCCAGGCCCTGAACCA-CGGATGAAGT-CGATGACAGCGAA 144 Query 23148 ACGCTCGCCGGCGGCGCCACGGTGGTGATCGGGATAACGCTGATCGGCCGGTTCTCCAAC 23207 ||||||||||||| || ||| ||||||||| || ||||||||||| || | |||| Sbjct 143 ACGCTCGCCGGCGCCGGCACAACGGTGATCGGTATTACGCTGATCGGGCGTTCTTCCAGG 84 Query 23208 TTGGCACCAGTGTCGATCGCTGAGAACTTCCCGGGCTCGTACTGCAGCGCAGTGATCTCG 23267 || || ||||| || | |||||| | ||||| |||| |||||| |||| ||| Sbjct 83 CGTGCGCCGGTGTCAATGAAAGCGAACTTGCTCGGCTCAAACTGGAGCGCACTGATTTCG 24 Query 23268 AAGACACCC 23276 || | ||| Sbjct 23 TAGTCGCCC 15 >seq30077 Length=415 Score = 84.2 bits (92), Expect = 8e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 14959 TGGTGCGGACGGAGAGACTCGAACTCTCACGCCTTGCGGCGCTGGAACCTAAATCCTGT 15017 ||||||||| | ||||||||||||||| |||||| ||||||||||||||||||||| || Sbjct 77 TGGTGCGGATGAAGAGACTCGAACTCTTACGCCTCGCGGCGCTGGAACCTAAATCCAGT 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190012021750322