Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq27246 93.3 2e-14 >seq27246 Length=502 Score = 93.3 bits (102), Expect = 2e-14 Identities = 165/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 19044 TGGCTGCTACTGGTTGAGTCTGTCACCAGTCATGGACCGGTTGATGGGAAGCGGCATGCT 19103 |||||||| || || | |||||| ||||||||||| ||||| |||||||| Sbjct 127 TGGCTGCTGCTCTGCGAAGCGGTCACCTCACATGGACCGGTAGATGGAAAGCGGCACCAA 186 Query 19104 GAGCTTGCCAKGCTGTTTGCCGG-ATCAACAGCCGGACTTGTCTATGTGACCGCTTTTCC 19162 ||||||| | || || | | ||| ||| || || ||||||||| | || || || Sbjct 187 GAGCTTGAGAAACTCTTCAAGGACAGCAA-AGCTGGCCTGGTCTATGTGTCGGCGTTCCC 245 Query 19163 AAATCGCTCCATCATGGGGCGATATCTTGGTGAAATCGCATGGGAAACAGAGGTATGGGT 19222 | ||| ||| ||| | ||||| | || || || |||||||| |||| |||| Sbjct 246 TGACCGCGCCACGATGCGCAAGTATCTGGCCGATATTGCTTGGGAAACCGAGGCTTGGGC 305 Query 19223 GGCTGATGCACCTTCTCATCTTATTCACTTCAACGGAGTGCGATTTCTTGGCCCCTAC 19280 |||||||| || | || || || ||||||||||| | ||| || || || || ||| Sbjct 306 CGCTGATGCCCCCACGCACCTGATGCACTTCAACGGTGAGCGGTTCCTCGGGCCTTAC 363 Lambda K H 0.636 0.409 0.916 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190374062362714