Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_028699.1 Length=40740 Score E Sequences producing significant alignments: (Bits) Value seq71026 172 1e-38 >seq71026 Length=3928 Score = 172 bits (190), Expect = 1e-38 Identities = 487/741 (66%), Gaps = 14/741 (2%) Strand=Plus/Plus Query 765 AACCCGGCTCAGTTCATCATCGACTGGGGCATGACGACGGACCCGCGTAATATCGATTAT 824 ||||||| | ||||||| |||||||||||||||| || |||||||| ||| Sbjct 3001 AACCCGGTCGACTTCATCAACGACTGGGGCATGACGTTCGATCCGCGTAACGCCGAGATC 3060 Query 825 GGCCTGCCGGTCACCATCCCTTTTCTGCTATTCCCGAAACAGGAAGAGTGGATTCACTGG 884 || |||||| | |||||| || ||||| |||||||| |||| |||| | |||| Sbjct 3061 GGGCTGCCGACCGTCATCCCCTTCCTGCTGTTCCCGAAGCAGGCCGAGTTCGTCACCTGG 3120 Query 885 ATTATGGAACGCTGGGGCAAGCGGGAGAACGGTATCACCGAAAAATCCCGTGAAATGGGG 944 | || |||||| |||||| |||| | |||| || ||||| || ||||| Sbjct 3121 GTGCGCGAGCGCTGGCTGGGTCGGGAGGACGGCCTGGCCGAGAAGTCCCGCGACATGGGC 3180 Query 945 CTGAGCTGGACGGCGATCGGGATGGCCTGTTCGCTTTGCCTGTTTAACAAAGAGATGGTC 1004 | |||| | | |||| || || | | | || ||| || | | || Sbjct 3181 ATCTCCTGGCTGTCCGTCGGCATCGCGGTCTGGATGTGGACGTTCTACTCCGGCGTCGTG 3240 Query 1005 ATCGGCTTTGGTTCCCGTAAAGAGGAATATGTCGACAGTACTGGTGACCCTAAGGCGCTG 1064 |||||||| || ||| || ||||| || ||||||| ||| ||||| ||| ||||| Sbjct 3241 ATCGGCTTCGGCAGCCGCAAGGAGGAGTACGTCGACAAGCTTGGCGACCCGAAGTCGCTG 3300 Query 1065 CTCTGGAAGGCGCGCAAGTTTGTGGAGACGCTGCCCGTCGAGTT----TCGTGGGTCATG 1120 ||||||||| ||| |||| | | |||||| | |||||| || || | | Sbjct 3301 TTCTGGAAGGTCCGCCAGTTCATCAACCTGCTGCCGGCCGAGTTCCGCCCGAAGGGC-TA 3359 Query 1121 GAATGAGAAGAAGCATGCACCGTACATGCG--TGTTGAATTTCCTGAGACAGGCGCGGTC 1178 | ||| |||||||| ||| ||||||| | |||| || |||||||| || | Sbjct 3360 CATCGAGGCAAAGCATGCGCCGCACATGCGCATCCTGAA--CCCGGAGACAGGGGCCGCG 3417 Query 1179 ATCAAGGGCGAGGCTGGTGACAATATTGGACGTGGTGACCGAACCACACTCTATCTGGTG 1238 ||| |||||||| || ||||| || || || ||| |||| ||| | |||| | | Sbjct 3418 ATCGTCGGCGAGGCCGGCGACAACATCGGCCGCGGTAACCGCACCTCGATCTACTTCAAG 3477 Query 1239 GATGAGGCTGCATTTCTGC-AACGCCCGCTACTGATTGATGCGGCGTTATCGCAAACCAC 1297 || || | || |||| | | || || ||| || || ||| | || || ||| | Sbjct 3478 GACGAATCGGC-CTTCTACGAGCGGCCAGACGCGATCGACGCCGCGCTGTCACAGACCTC 3536 Query 1298 CCGTTGCCGTATTGACCTGAGTTCGGTCAACGGCATGGCGAACCCGTTTGCGCAGAAACG 1357 ||| || |||||| | |||||||||| | |||||||| | ||| || Sbjct 3537 GAACTGCAAGATCGACCTGTCCACAGTCAACGGCAACGGCAACCCGTTCTACCGGAAGCG 3596 Query 1358 CCACGGCGGAAAGATACCGGTATTCACATTCCACTGGCGCAGCGACCCCCGTAAGGATGA 1417 ||| |||| ||| | || ||||| |||||||||||| |||||| || ||||| || Sbjct 3597 GCACAGCGGCAAGGTGAAAGTGTTCACCTTCCACTGGCGCGACGACCCGCGCAAGGACGA 3656 Query 1418 TGAGTGGTATCGCAGGGAATGCGAGAAAATCGACAATCCGGTGGTAGTGGCTCAGGAGCT 1477 || ||||| | | | || ||| ||| | |||||||| | ||||| || || | Sbjct 3657 TGCCTGGTACCAGAAGCAACGCG---AAAGCCTGGATCCGGTGATCGTGGCGCAAGAAAT 3713 Query 1478 TGACCTGAACTACAGCGCATC 1498 ||| | | |||| ||| || Sbjct 3714 CGACATCGATTACAACGCCTC 3734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127032560392924