Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_028747.1 Length=47618 Score E Sequences producing significant alignments: (Bits) Value seq833769 111 5e-20 seq28280 98.7 3e-16 >seq833769 Length=269 Score = 111 bits (122), Expect = 5e-20 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 37190 AGTGCCTGCGCGTGCTGAAGCCCGGCGGGCACCTGCTCGCGTTCGGCGGCACCCGCATGT 37249 ||||||||||||| |||||||| ||||| || || || || |||| ||||| |||| Sbjct 206 AGTGCCTGCGCGTACTGAAGCCTGGCGGCCATCTACTGGCCTTCGCAGGCACGCGCACCC 147 Query 37250 GGCACCGGCTAGCGGCGGCGATCGAGGACGCCGGGTTCGAGATCCGCGACTCCATCGCCT 37309 ||| || | || | |||||||| || || ||||||||||||||| ||||||| Sbjct 146 AGCATCGCATGGCCGTTCGCATCGAGGATGCGGGTTTCGAGATCCGCGACATGATCGCCT 87 Query 37310 GGCTGTACGGCAGCGGCTTCCCGAAGTCGCTCGACG 37345 || | |||||| |||||||||||||| | | ||| Sbjct 86 GGGTCTACGGCTCGGGCTTCCCGAAGTCACACAACG 51 >seq28280 Length=381 Score = 98.7 bits (108), Expect = 3e-16 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 36894 CGGCGATTGCGTCGAGGTGCTCCGCACGCTGCCCGACAACTCGGTCGACGCCGTCGTGAC 36953 ||| || ||| |||| ||| | ||| | || |||||||||||||||||||| ||||||| Sbjct 201 CGGAGACTGCCTCGAAGTGATGCGCGGGATGGCCGACAACTCGGTCGACGCCATCGTGAC 142 Query 36954 GGATCCGCCGTACGGGCTGGAGTTCATGGGCAAGGACTGGGA 36995 ||||| || ||||| ||| ||||||||||||| |||||| Sbjct 141 CGATCCACCCTACGGCCTGTCGTTCATGGGCAAGCGCTGGGA 100 Score = 84.2 bits (92), Expect = 6e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 37186 GCCGAGTGCCTGCGCGTGCTGAAGCCCGGCGGGCACCTGCTCGCGTTCGGCGGCACCCGC 37245 |||||||||||||||||| ||||||| ||||| |||||||| || |||| ||| |||||| Sbjct 71 GCCGAGTGCCTGCGCGTGTTGAAGCCTGGCGGCCACCTGCTGGCCTTCGCCGGTACCCGC 12 Query 37246 ATGTGGCACCG 37256 | | |||||| Sbjct 11 ACGCAGCACCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148499071875960