Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_028978.1 Length=60609 Score E Sequences producing significant alignments: (Bits) Value seq71034 150 7e-32 >seq71034 Length=3563 Score = 150 bits (166), Expect = 7e-32 Identities = 290/404 (72%), Gaps = 34/404 (8%) Strand=Plus/Plus Query 55637 CACCACAACTACACGCAGAAGGAGCAGCACGGCGGCCGTGATGTGTGGCTGACCCGCAAG 55696 |||||||||||| |||||||||||| ||| |||| |||||| | |||| |||||| Sbjct 2282 CACCACAACTACGTGCAGAAGGAGCACCACTTCGGCAAGGATGTGCTGGTGACGCGCAAG 2341 Query 55697 GGCGCG--ATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCT 55754 |||||| |||| |||| ||| || | || ||| | |||||||| |||||||| | Sbjct 2342 GGCGCGGTATCGGCGCG--CGAAGGGGAGCTCGGCATCATTCCGGGATCGATGGGGGCGA 2399 Query 55755 GTTCGTATGTCGTGACCGGCAAGGGTAATCCCGAGGCGTTGTGCTCAGC-GCCG-CACGG 55812 ||| ||||| ||||||||| ||| |||| | ||| | |||| || | ||||| Sbjct 2400 AGAGTTATATCGTGCGCGGCAAGGGCAATGCCGA-GAGTT-TCAACAGCTGCAGCCACGG 2457 Query 55813 TGCGGGCCGCCGGTTCTCGCGCA-CGAAGGC--GCGCAAGCTGTTCACGGTCGACGACC- 55868 || |||||| | |||| ||||| | |||| ||| || |||||||||||| Sbjct 2458 CGCCGGCCGCACCATGAGCCGCACCGAAGCCAAGCGC-CGCTATT--CGGTCGACGACCA 2514 Query 55869 --TCGAGGCGCGTATGCAGGGCATCGAGTACCGCAAGGGCG-AGGCGTGGGTCGACGAGA 55925 || ||||| | | ||| |||||| |||||||| || |||||| | ||||||||| Sbjct 2515 GGTCAAGGCG---ACCGAAGGCGTCGAGTGCCGCAAGGACGAAGGCGT-GATCGACGAGA 2570 Query 55926 TTCCCGA-CGCATACAAGCCGATCGACGTCGTGATGCACGACGCCGAGAG-CCTGGT--- 55980 |||||| || |||||| ||||||| ||||||||| | ||| ||| | |||||| Sbjct 2571 -TCCCGATGGCCTACAAGGACATCGACGCCGTGATGCA-GGCGCAGAGCGACCTGGTCGA 2628 Query 55981 -GTCGGTGGACGCTGAGCTGCGGCAGCTCTTGAACGTCAAGGGG 56023 || |||| || | |||| |||| || || ||| |||||| Sbjct 2629 AGT-GGTGCACAC---GCTGAAGCAGGTCGTGTGCGTAAAGGGG 2668 Score = 96.9 bits (106), Expect = 1e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 54930 TGCCTTTCGTCTATCCGCATGTGGCGCTGATGCCCGATGCGCATTTCGGCAAGGGCAGCA 54989 |||| ||| |||| ||| ||||| ||||||||| | || | |||||||| | Sbjct 1554 TGCCCTTCATCTACAAGCACATGGCGGCGATGCCCGACGTCCACGTGGGCAAGGGATCGA 1613 Query 54990 GTGTCGGCACGGTGATCCCGACCGAGGGCGCCGTCATTCCCGCCGCGGTGGGTGTCGATA 55049 |||||| ||||||||||| |||||| ||||||| |||||||| || ||||| | Sbjct 1614 CCATCGGCAGCGTGATCCCGACGCTGGGCGCGATCATTCCGGCCGCGGTCGGGGTCGACA 1673 Query 55050 TTGGCTGCGGCATGATCGCGGCC 55072 | |||||||||||||| || ||| Sbjct 1674 TCGGCTGCGGCATGATGGCCGCC 1696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189044499424102