Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq839203 127 1e-24 seq1978033 104 2e-17 seq878454 98.7 7e-16 seq139869 98.7 7e-16 seq138792 84.2 1e-11 >seq839203 Length=7618 Score = 127 bits (140), Expect = 1e-24 Identities = 157/211 (74%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || |||||||| || ||||| || | Sbjct 1136 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTTGAGTCTTCC 1077 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || | | ||||| || || | || || || || Sbjct 1076 GACACGATCGACAATGTCAAAGCGAAGA-TCCAGGACAAGGAGGGCATCCC-CCGGACCA 1019 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || ||||| ||||| ||||| || || | ||||| ||| ||||||||| Sbjct 1018 ACAGCGGTTGATCTTTGCTGGCAAGCAACTTGAGGATGGTCGCACCCTAGCCGATTACAA 959 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || ||||||||||| | || ||||| Sbjct 958 CATCCAGAAAGAGTCCACTCTTCACCTAGTT 928 >seq1978033 Length=13150 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| ||||| ||||| || | Sbjct 5055 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCT 5114 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || || | || ||| | ||||| || || Sbjct 5115 GACACGATTGACAACGTCAAGGCCAAGATCCAGGATATGGAGGGTATCCCGCCGGACCAG 5174 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || ||||||||||| || || || || | ||||| ||| ||||||||| Sbjct 5175 CAGCGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGCACCCTAGCTGATTACAAC 5234 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 5235 ATCCAGAAAGAGTCTAC 5251 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| || ||||| || || || || ||||| || || || || || | Sbjct 5282 AATGCAAATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAGGTGGAATCTTC 5341 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| |||| ||| | || | || | | ||||| || || | || || || | Sbjct 5342 GGACACCATTGACAATGTGAAGGCTAAGA-TCCAGGACAAGGAGGGCATCCCCCCGGACC 5400 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||||| | || ||||| || || || || || || | |||||| | | ||||||| Sbjct 5401 AGCAGCGCCTGATCTTTGCAGGTAAGCAGCTTGAGGATGGTCGCACTCTTGCAGATTACA 5460 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 5461 ACATTCAGAAGGAGTCTAC 5479 >seq878454 Length=5435 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || ||||| | || || || ||| || Sbjct 834 ATGCAGATTTTCGTGAAGACCCTCACAGGCAAGACCATCACCTTGGAGGTGGAGTCCTCG 893 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 894 GACACCATCGACAATGTGAAGGCGAAGA-TCCAGGACAAGGAGGGCATCCCCCCGGACCA 952 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||||||||| || || || || | ||||| | | |||||||| Sbjct 953 GCAGCGACTTATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCAGATTACAA 1012 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 1013 CATCCAGAAGGAGTCCAC 1030 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || ||||| || || || || ||| | Sbjct 606 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCT 665 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||| || || || ||||| | || || || || Sbjct 666 GACACCATCGACAACGTGAAGGCAAAGATCCAGGATAAGGAAGGCATCCCCCCGGACCAG 725 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || || || || | ||||| | | || || ||| Sbjct 726 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCTGACTATAAC 785 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 786 ATCCAGAAGGAGTCCAC 802 >seq139869 Length=4701 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || || || ||||| || || ||||| || | Sbjct 773 ATGCAGATTTTTGTCAAGACCCTCACCGGGAAGACCATCACCCTGGAGGTTGAGTCTTCT 832 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||| ||| ||||| || || | || ||||| || Sbjct 833 GACACCATTGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAG 892 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || ||||| || || || || || | ||||| | | || |||||| Sbjct 893 CAGCGCTTGATCTTCGCCGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGACTACAAC 952 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 953 ATCCAGAAGGAGTCCAC 969 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || || || ||||| | || ||||| ||| || Sbjct 545 ATGCAGATCTTCGTGAAGACACTCACCGGCAAGACCATCACCTTGGAGGTTGAGTCCTCG 604 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || || || || Sbjct 605 GACACCATTGATAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCCCCGGACCA 663 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || |||||||| || || || || | ||||| | | |||||||| Sbjct 664 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAA 723 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 724 CATCCAGAAGGAATCCAC 741 >seq138792 Length=3226 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||||||||| || || ||||| | || || || || || Sbjct 79 ATGCAAATCTTTGTAAAGACCCTCACGGGCAAGACCATCACATTGGAGGTGGAGTCTTCG 138 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | ||| || ||||| ||||| | || || || || Sbjct 139 GACACCATCGACAATGTGAAGGC-AAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCA 197 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || || || || | || || || | || ||||| Sbjct 198 GCAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGTACCTTGGCGGACTACAA 257 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 258 CATTCAGAAGGAGTCCAC 275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 329449703453708