Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq980070 95.1 1e-14 >seq980070 Length=1613 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 29726 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785 || |||||||||| || || || | |||| ||||| || |||||||| ||||| Sbjct 428 TGGGCCATCATGTGGGTCAGCAGGGCGTAGGAAGCGATATTGAAGGGCACGCCGAGGAAG 487 Query 29786 ATGTC--CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACT 29843 ||||| | ||| | ||||||||||||||| || |||| |||||| |||||| |||| Sbjct 488 ATGTCGGCGCTG--CGCTGGTAGAGCTGGCAGGACAGCTTGCCGTCGGCCACGTAGAACT 545 Query 29844 GACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCAC 29903 | | | ||| ||||| || || || ||| | || ||| ||||||||| Sbjct 546 GGAAGAAGGCGTGGCAGGGCGGCAGCTTCATCTGCGGCACGTCGGCCACGTTCCAGGCGG 605 Query 29904 ACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCA 29948 | ||||| | ||| | || || ||||||||||| |||||| Sbjct 606 AGACGATCAGGCGGCGCGAGTCCGGATTGTTCCTGATCTGGTCCA 650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395877353169286