Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq980070 82.4 5e-11 >seq980070 Length=1613 Score = 82.4 bits (90), Expect = 5e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 27220 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 27279 || |||||||||| || || || | |||| ||||| || ||||| || ||||| Sbjct 428 TGGGCCATCATGTGGGTCAGCAGGGCGTAGGAAGCGATATTGAAGGGCACGCCGAGGAAG 487 Query 27280 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGA 27339 ||||| | | |||||||||||| || || |||| || ||| ||||| ||||| Sbjct 488 ATGTCGGCGCTGCGCTGGTAGAGCTGGCAGGACAGCTTGCCGTCGGCCACGTAGAACTGG 547 Query 27340 CATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 27399 | | ||||||||| || || || ||| | || ||| |||||||||| | Sbjct 548 AAGAAGGCGTGGCAGGGCGGCAGCTTCATCTGCGGCACGTCGGCCACGTTCCAGGCGGAG 607 Query 27400 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCA 27442 ||||| | ||| | || || ||||||||||| |||||| Sbjct 608 ACGATCAGGCGGCGCGAGTCCGGATTGTTCCTGATCTGGTCCA 650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360149645051531