Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq58141 93.3 1e-14 seq51269 91.5 5e-14 seq18566 87.8 6e-13 >seq58141 Length=7631 Score = 93.3 bits (102), Expect = 1e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 30696 CGGGTTCCAGGTGATCCAGACTTCGGAGTCGCACTCGCGAACCGTCGGCACCAGCTTCTG 30755 |||||| || ||||||||| |||||||||| |||||| | ||||| | |||| || Sbjct 3502 CGGGTTGAAGCTGATCCAGATTTCGGAGTCGGCCTCGCGGATGGTCGGGATCAGCACCTT 3561 Query 30756 CCAGGCGATCTCACTGACGTTCTCGGCCTCATCGACCCATGCGATGAGGATGCGCGCCTT 30815 |||| | |||| |||||||| || ||||| |||||||| ||||| | || ||| Sbjct 3562 CCAGCTGTTCTCGCTGACGTTTTCCGCCTCCTCGACCCAGACGATGTTGTAGCCGAACTT 3621 Query 30816 CGACTTGAT 30824 ||||||||| Sbjct 3622 CGACTTGAT 3630 >seq51269 Length=252 Score = 91.5 bits (100), Expect = 5e-14 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 42780 CGGCGAAACCCTGCATATCGGCGACAACATCACCGTCACGGTCCTTGGCAGCCAGGGCGA 42839 ||||||||||||| ||||| ||| | | |||||| || |||||| | |||| | Sbjct 243 CGGCGAAACCCTGATGATCGGTGACTCGGTGAGCGTCACCGTGCTTGGCGTCAAGGGTAA 184 Query 42840 CCAGGTGCGCCTCGGCATCACCGCCCCGGACGACGTCGCCATCCACCGCTCCGAGATCTA 42899 ||||||||| ||||||||||||| ||| | |||||||| | || ||| |||||||| Sbjct 183 CCAGGTGCGTATCGGCATCACCGCGCCGAAGGACGTCGCTGTGCATCGCGAAGAGATCTA 124 Query 42900 CCAGC 42904 |||| Sbjct 123 TCAGC 119 >seq18566 Length=1918 Score = 87.8 bits (96), Expect = 6e-13 Identities = 145/206 (70%), Gaps = 9/206 (4%) Strand=Plus/Plus Query 4396 GCGTTCCTAATGAAGTACCACGGCATGGGCGAGAACATCCGTCCGCTGGACGAGCCGGTC 4455 || ||||| ||||||||| || ||| | || | |||| | || || |||||| | Sbjct 1647 GCCTTCCTGATGAAGTACTACAGCACCGATCAGGA--TCCGCGC-CTCGAGGAGCCGCTG 1703 Query 4456 AGCACCGTGACCACCAAGGACCGGCTGGCCCTGGTCACCGTGTGGATCAGCGGCAGCCCC 4515 ||| | ||||| |||||||| | | ||||| || | ||| ||||| | Sbjct 1704 CACACGATTACCACTAAGGACCGCTTCGGACTGGTGACGAT-----TCAAGGGCAGGAC- 1757 Query 4516 TACGTGATCGTCGACATCCGATTGCGGATGCTGAAACCGCGTGAGTTGTACCGCGCCCAG 4575 |||| ||||||||||||| | |||| |||||| |||| |||||||| |||||||| Sbjct 1758 TACGAGATCGTCGACATCGGTCTGCGCATGCTGGCGCCGCACGAGTTGTATCGCGCCCAA 1817 Query 4576 GGCTTCCCCGACAGCTACATCATCGA 4601 |||||||||| |||| | ||||| Sbjct 1818 GGCTTCCCCGCTGACTACGTTATCGA 1843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156504538865490