Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_030929.1 Length=49033 Score E Sequences producing significant alignments: (Bits) Value seq1975374 127 6e-25 seq57309 93.3 1e-14 seq28707 80.6 8e-11 >seq1975374 Length=208 Score = 127 bits (140), Expect = 6e-25 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 7204 TTGGTTCGGATACCTGCCGAGGTTTCTGATCACCCTGGCTGCTGACTACTGCTCCCAGTG 7263 ||||||||| || ||||| || | |||||| ||||||||||||||||| || || Sbjct 203 TTGGTTCGGCGACGTGCCGGCCTTCATCATCACCTTGGCTGCTGACTACTGCGCCGCCTG 144 Query 7264 CTCCGACGCGGAGTTCTGCGCATTGGTCGAGCATGAGCTCTACCACATCTGCCAAGAGCA 7323 |||||||| || |||||||| |||| ||||| ||| | | |||||| || | | Sbjct 143 TTCCGACGCTGACTTCTGCGCGCTGGTGGAGCACGAGTTATTTCACATCGCTCAGGCCAA 84 Query 7324 CAACCAATATGGCGAGCCCAAGTTCACCGAGGAGGGCTTTCCAAAGCTGAAGCTCCGCGG 7383 | ||||| |||| |||||||||||| | || || | || ||||| || | ||||| Sbjct 83 GGATCAATACGGCGCTCCCAAGTTCACCCAAGAAGGACTGCCCAAGCTTGAGATGCGCGG 24 Query 7384 GCATGACGTCGAGGAGTTCGTCG 7406 || ||||| || |||||||||| Sbjct 23 ACACGACGTTGAAGAGTTCGTCG 1 >seq57309 Length=279 Score = 93.3 bits (102), Expect = 1e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 31345 AGCAGCAGTTGCTGCATATCCTCCCGAACGCCGGCTCGAGGGCCGGCGTTTTTGTTGGTG 31404 ||||||| |||||||| |||||||| | |||| || | || ||||||||||| || Sbjct 2 AGCAGCAATTGCTGCAAATCCTCCCCAGCGCCCGCCCAGTCGCGGGCGTTTTTGTGTCTG 61 Query 31405 CGCTGAACCGCGGGATGACGCGCTTCGGTATCACGTCGCCTGTGCGCGCGGCGACGTTCC 31464 ||||| | | ||| |||| || | || || ||||| ||||||| |||| |||| | Sbjct 62 CGCTGGTCACGGCCATGGCGCGGTTTCGCATTACCTCGCCGGTGCGCGAGGCGGCGTTTC 121 Query 31465 TCGCCCAGGTCGGCCACGA 31483 |||||||| ||| ||||| Sbjct 122 TCGCCCAGTGCGGGCACGA 140 >seq28707 Length=214 Score = 80.6 bits (88), Expect = 8e-11 Identities = 111/154 (72%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 7762 CCCGCAAGCGCTTCCGCGAGGAGATCGCCGACATCCCGATCGCCAACCGCGCCTACCGAC 7821 ||||||||||||| || || |||| ||| || ||||||||||||||||| || | ||| | Sbjct 44 CCCGCAAGCGCTTTCGTGAAGAGACCGCAGAGATCCCGATCGCCAACCGAGCATTCCGGC 103 Query 7822 TGAGGGCATTGGGTCGGATGGCTGAGCGCGCCGAGGGCATGCGAAACATGGCCCTGGCTG 7881 | | || || || | | ||||| |||||| ||| ||||| | ||| || Sbjct 104 TTCGCGCCATGAACCGTTTTGTCGAGCGGGCCGAGACGATGAAGAACATCGGCCTCGCCA 163 Query 7882 CCCAGCTTTACGAGCAGGCCGCCAAGG-AGTCGG 7914 ||| | |||||||||||| |||| |||||| Sbjct 164 TGCAGATCCTCGAGCAGGCCGCGAAGGAAGTCGG 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152915343139190