Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq29217 343 3e-90 seq28762 95.1 2e-15 >seq29217 Length=387 Score = 343 bits (380), Expect = 3e-90 Identities = 273/327 (83%), Gaps = 1/327 (0%) Strand=Plus/Plus Query 622 GCCAAAGCTGCTGACAGGCTCGAACCAAAAGGTACGTGGTCGGTTATCTCCGTAGGTCGT 681 |||||| |||||| ||||| | ||||||||||| | || | ||||| | || || || Sbjct 6 GCCAAAACTGCTGTCAGGCATGGACCAAAAGGTATGGGGCCAGTTATTCCTGTGGGATGT 65 Query 682 GGAGATACGTCGCCTTCAGACCACCGGTGAAAAGGCAGGTCCTAACCCAGTCGTGTGACA 741 || ||||||||| || || ||||||||||||||| ||||| ||| |||||||||| Sbjct 66 GGGAATACGTCGCTACAAGGCCTCCGGTGAAAAGGCAGACCCTAAACCAATCGTGTGACA 125 Query 742 GTCAGGGAACGTGGTAAGCCCGTATCGCCGCCCTCGGGGCAGGGGAGCCGTAAGGCGAAC 801 | |||||||||||||||||||||| |||||| ||||| |||| || ||| |||| || | Sbjct 126 GGTAGGGAACGTGGTAAGCCCGTATGGCCGCCTTCGGG-CAGGTGAACCGCAAGGGGATC 184 Query 802 TGTTGGCGGTGCGGGTATGGGATCGCAGAGAAAGCGAACGCCAGGCTGTAATCGTCTGGA 861 ||||||| ||||||||||||||||||||| |||||||||||| |||||||| | ||| Sbjct 185 TGTTGGCTGTGCGGGTATGGGATCGCAGAAAAAGCGAACGCCGAGCTGTAATGGCGCGGA 244 Query 862 TAGGGGTTGGAACATCACCCCACGGGAAACCGGGCAGACTTCTGCGTGGTCTTTCGTCGC 921 ||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| |||| Sbjct 245 TAGGGGTTGGAACATTACCCCACGGAAAACCGGGCAAACTTCTGCGTGGTCTTTTATCGC 304 Query 922 AAGAACTCTGATTGAACCTGTCTCAAT 948 | |||| |||| | ||||||||||||| Sbjct 305 ATGAACGCTGAGTAAACCTGTCTCAAT 331 >seq28762 Length=541 Score = 95.1 bits (104), Expect = 2e-15 Identities = 290/439 (66%), Gaps = 21/439 (5%) Strand=Plus/Minus Query 1624 TGGAGGCGGACATACAAGGGTGTTTTGACCACATCAATCATGACTGGCTACTGAACCATG 1683 |||| | ||| || |||| || || ||| |||||| ||| |||||||| |||| || | Sbjct 445 TGGAAGGGGATATCAAAGGTTGCTTCGACAACATCAGTCACGACTGGCTGATGAAACACG 386 Query 1684 TCCCCACGGACAAGGTGATCCTCCGGAAATGGTTGAAGGCCGGCGTGATCCACAAAGGCC 1743 | || | ||| | | || | | ||| |||| || ||| | | | | | Sbjct 385 TACCAATCGACCGGCATGTGCTGTCGCAGTGGCTGAAAGCAGGCTTCAGGGAAGACCGTA 326 Query 1744 AGCTCCAGGCAACGGATGCTGGAACACCTCAAGGCGGAATCATCTCGCCTACTTTGGCAA 1803 || | | |||||||| || ||||| || ||||| ||||| || ||| | |||| Sbjct 325 AGTTGTTTCCGACGGATGCGGGCACACCACAGGGCGGCATCATTTCCCCTGTGCTCGCAA 266 Query 1804 ACATGGTGCTCGATGGCCTGGAATCACAGCTCAAGCGACACCTGGGCGTGACAAGGGCGA 1863 |||| || || || || |||| | ||||| ||| || || | || | | Sbjct 265 ACATTGTCCTTGACGGGCTGGGC---CGGCTCAT-CGA----TGCGC-TCCCACGCCGCA 215 Query 1864 AGAAGCTGAAACTCAATGTGGTGCGCTATGCGGACGACTTCGTCATCACCGGTGTCTCTC 1923 | ||| || |||| | || ||||| || |||||||| || ||||| || | |||| Sbjct 214 ACAAG-TGCAACT-----TCGTCCGCTACGCAGACGACTTTGTAATCACAGGAGCCTCTG 161 Query 1924 CCGAGGTACTGGA--GAAAGAAGTCAAACCCTGGGTAGAGCAGTTCCTGGCGGTACGCGG 1981 | ||| | ||||| | ||| ||||| || || | ||||||| |||| | | || Sbjct 160 CGGAGATCCTGGAACGCAAG--GTCAAGCCGATCGTCGTCAAGTTCCTCGCGGAAAGAGG 103 Query 1982 GCTGCAGCTCTCTCTGGAGAAA-ACGCGGATCGCCCACATAGATCAGGGCTTCGACTTCC 2040 ||| |||||| | || || ||| |||| | ||||| || | |||||||||||| Sbjct 102 GCTCACGCTCTC-CGAAAGCAAGACGAAGATCACGCACATGGACGAAGGCTTCGACTTCT 44 Query 2041 TCGGTTGGAACTTCCGCAA 2059 | |||||||||||||| || Sbjct 43 TGGGTTGGAACTTCCGGAA 25 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101742775201438