Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= NC_031007.1
Length=223935
Score E
Sequences producing significant alignments: (Bits) Value
seq980070 141 1e-28
>seq980070
Length=1613
Score = 141 bits (156), Expect = 1e-28
Identities = 218/311 (70%), Gaps = 0/311 (0%)
Strand=Plus/Minus
Query 99857 TCGTGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGGGTGCCGTTTAATATTGCG 99916
|| || ||||| || || ||||||||||| | ||| | || ||||| || ||||| ||
Sbjct 519 TCCTGCCAGCTCTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCCTTCAATATCGCT 460
Query 99917 TCATACGCTTTGTTGATCCACATGTTTGCACAGCAGGCTAACATGACCGTGGGTGATTTC 99976
|| ||||| || ||| ||||||| | || |||||||| | || ||||| || |||
Sbjct 459 TCCTACGCCCTGCTGACCCACATGATGGCCCAGCAGGCCGGCCTGGAAGTGGGCGACTTC 400
Query 99977 GTCTGGTCTGGTGGTGACGTACATCTGTACAATAACCATCTGGAACAAACCCGTACCCAG 100036
||||| | || || ||| || |||||| ||||| ||||||| | |||
Sbjct 399 ATCTGGACCGGCGGCGACTGCCACCTGTACTCGAACCACATGGAACAGGTCGAGCTGCAG 340
Query 100037 TTAGGTCGTGCCCCGCGTCCGTTACCTAAGCTGATTATCAAACGTAAGCCAGACTCCATC 100096
| | || | ||||||| | || | |||| | ||||| || ||||| || || |
Sbjct 339 CTCGCGCGCGAAGAGCGTCCGCTGCCCAGGCTGGTCATCAAGCGCAAGCCCGATTCGCTG 280
Query 100097 TTCGAATATAAGTTTGAAGACTTCGAACTTGAAGGCTACGACCCGCATCCTGCAATCAAA 100156
||||| || | ||| || |||||||| | | |||||||| |||||||| || |||||
Sbjct 279 TTCGACTACAGGTTCGACGACTTCGAGATGGTCGGCTACGATCCGCATCCCGCGATCAAG 220
Query 100157 GCACCGGTCGC 100167
|| ||||| ||
Sbjct 219 GCCCCGGTGGC 209
Score = 105 bits (116), Expect = 9e-18
Identities = 169/240 (70%), Gaps = 2/240 (1%)
Strand=Plus/Minus
Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAA 99262
|| || || || ||||| || | || | ||||| |||||||||| ||||| |||||
Sbjct 939 GATCGCACCGGTACCGGCACGCGTTCCGTGTTCGGCTACCAGATGCGCTTCAACCTGCAG 880
Query 99263 GAAGGCTTTCCGCTGGTAACGACTAAGC-GCTGTCACATGCGTTCGATTATTCACGAACT 99321
|| ||||| |||||||| ||||| ||| | || ||| || ||||| || || |||||
Sbjct 879 GACGGCTTCCCGCTGGTGACGACCAAGAAGGTG-CACCTGAAGTCGATCATCCATGAACT 821
Query 99322 GCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTAT 99381
| ||||||||||| || |||||| || || | || || || || || | ||
Sbjct 820 CATCTGGTTCCTGAACGGTTCGACCAATATCGCCTACCTGAAGGAAAACGGCGTCTCGAT 761
Query 99382 TTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGGCG 99441
|||||||| ||| || | | ||| |||| || ||| | ||||| | ||||||||
Sbjct 760 CTGGGACGAGTGGGCCGACGAGAACGGCAACCTGGGCCCGATCTACGGCTACCAGTGGCG 701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 697854734224200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |