Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq980070 141 1e-28 >seq980070 Length=1613 Score = 141 bits (156), Expect = 1e-28 Identities = 218/311 (70%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 99857 TCGTGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGGGTGCCGTTTAATATTGCG 99916 || || ||||| || || ||||||||||| | ||| | || ||||| || ||||| || Sbjct 519 TCCTGCCAGCTCTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCCTTCAATATCGCT 460 Query 99917 TCATACGCTTTGTTGATCCACATGTTTGCACAGCAGGCTAACATGACCGTGGGTGATTTC 99976 || ||||| || ||| ||||||| | || |||||||| | || ||||| || ||| Sbjct 459 TCCTACGCCCTGCTGACCCACATGATGGCCCAGCAGGCCGGCCTGGAAGTGGGCGACTTC 400 Query 99977 GTCTGGTCTGGTGGTGACGTACATCTGTACAATAACCATCTGGAACAAACCCGTACCCAG 100036 ||||| | || || ||| || |||||| ||||| ||||||| | ||| Sbjct 399 ATCTGGACCGGCGGCGACTGCCACCTGTACTCGAACCACATGGAACAGGTCGAGCTGCAG 340 Query 100037 TTAGGTCGTGCCCCGCGTCCGTTACCTAAGCTGATTATCAAACGTAAGCCAGACTCCATC 100096 | | || | ||||||| | || | |||| | ||||| || ||||| || || | Sbjct 339 CTCGCGCGCGAAGAGCGTCCGCTGCCCAGGCTGGTCATCAAGCGCAAGCCCGATTCGCTG 280 Query 100097 TTCGAATATAAGTTTGAAGACTTCGAACTTGAAGGCTACGACCCGCATCCTGCAATCAAA 100156 ||||| || | ||| || |||||||| | | |||||||| |||||||| || ||||| Sbjct 279 TTCGACTACAGGTTCGACGACTTCGAGATGGTCGGCTACGATCCGCATCCCGCGATCAAG 220 Query 100157 GCACCGGTCGC 100167 || ||||| || Sbjct 219 GCCCCGGTGGC 209 Score = 105 bits (116), Expect = 9e-18 Identities = 169/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAA 99262 || || || || ||||| || | || | ||||| |||||||||| ||||| ||||| Sbjct 939 GATCGCACCGGTACCGGCACGCGTTCCGTGTTCGGCTACCAGATGCGCTTCAACCTGCAG 880 Query 99263 GAAGGCTTTCCGCTGGTAACGACTAAGC-GCTGTCACATGCGTTCGATTATTCACGAACT 99321 || ||||| |||||||| ||||| ||| | || ||| || ||||| || || ||||| Sbjct 879 GACGGCTTCCCGCTGGTGACGACCAAGAAGGTG-CACCTGAAGTCGATCATCCATGAACT 821 Query 99322 GCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTAT 99381 | ||||||||||| || |||||| || || | || || || || || | || Sbjct 820 CATCTGGTTCCTGAACGGTTCGACCAATATCGCCTACCTGAAGGAAAACGGCGTCTCGAT 761 Query 99382 TTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGGCG 99441 |||||||| ||| || | | ||| |||| || ||| | ||||| | |||||||| Sbjct 760 CTGGGACGAGTGGGCCGACGAGAACGGCAACCTGGGCCCGATCTACGGCTACCAGTGGCG 701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 697854734224200