Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq980070 174 2e-38 >seq980070 Length=1613 Score = 174 bits (192), Expect = 2e-38 Identities = 229/315 (73%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 100167 CTGTCCTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATC 100226 |||||||| || |||||||| || ||||| ||| | ||| | || ||||| ||||||||| Sbjct 522 CTGTCCTGCCAGCTCTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCCTTCAATATC 463 Query 100227 GCGTCGTACGCTCTGCTGGTTCACATGTTTGCACAACAAGCCAACATGGCCGTGGGCGAC 100286 || || ||||| |||||| |||||| | || || || ||| | ||| ||||||||| Sbjct 462 GCTTCCTACGCCCTGCTGACCCACATGATGGCCCAGCAGGCCGGCCTGGAAGTGGGCGAC 403 Query 100287 TTCGTCTGGACGGGTGGTGACGTACATCTGTATTCCAACCATCTGGAACAGACACGTACT 100346 ||| ||||||| || || ||| || ||||| || ||||| |||||||| || || Sbjct 402 TTCATCTGGACCGGCGGCGACTGCCACCTGTACTCGAACCACATGGAACAG-GTCGAGCT 344 Query 100347 -CAGCTAGGACGCACTCCGCGCACATTACCTAAATTGGTTATCAACCGTAAGCCTGACTC 100405 ||||| | ||| ||| | | || | |||| ||||| || ||||| || || Sbjct 343 GCAGCTCGCGCGCGAAGAGCGTCCGCTGCCCAGGCTGGTCATCAAGCGCAAGCCCGATTC 284 Query 100406 TATCTTCGACTATAAGTTTGAAGACTTCGAGATTGAGGACTACGAGCCTTACCCCGCCAT 100465 | |||||||| | ||| || ||||||||||| | | |||||| || | ||||| || Sbjct 283 GCTGTTCGACTACAGGTTCGACGACTTCGAGATGGTCGGCTACGATCCGCATCCCGCGAT 224 Query 100466 TAAAGCGCCGGTGGC 100480 || || |||||||| Sbjct 223 CAAGGCCCCGGTGGC 209 Score = 107 bits (118), Expect = 3e-18 Identities = 170/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 99524 CGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGC 99583 ||| || || || || || ||| || |||| || | || ||||| || || || Sbjct 940 CGATCGCACCGGTACCGGCACGCGTTCCGTGTTCGGCTACCAGATGCGCTTCAACCTGCA 881 Query 99584 TGAAGGTTTTCCTCTGGTCACTACTAAGC-GCTGTCACCTCCGTTCTATTATTCATGAAC 99642 || || || || ||||| || || ||| | || ||||| || || || ||||||| Sbjct 880 GGACGGCTTCCCGCTGGTGACGACCAAGAAGGTG-CACCTGAAGTCGATCATCCATGAAC 822 Query 99643 TCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTA 99702 || | ||||||||||| || ||||||| | |||||||| || ||||||||| | | Sbjct 821 TCATCTGGTTCCTGAACGGTTCGACCAATATCGCCTACCTGAAGGAAAACGGCGTCTCGA 762 Query 99703 TCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGC 99762 ||||| | ||||||| |||||||||| || | || ||| | ||||| | ||||||| Sbjct 761 TCTGGGACGAGTGGGCCGACGAGAACGGCAACCTGGGCCCGATCTACGGCTACCAGTGGC 702 Query 99763 G 99763 | Sbjct 701 G 701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715203310345560