Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq7353 104 6e-18 seq138243 82.4 2e-11 >seq7353 Length=217 Score = 104 bits (114), Expect = 6e-18 Identities = 130/175 (74%), Gaps = 5/175 (3%) Strand=Plus/Minus Query 26908 GCCATTCATGCCCACGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCA 26967 ||| | |||| | || ||||||||||||||| |||| | ||| | | || ||| Sbjct 175 GCCTTGCATGTCGACCACGATTTCAGTGGTGTAACGCTTGATGCCGTCTTTTTC---CCA 119 Query 26968 TTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACC 27027 | |||||| |||| |||||| ||| | |||| |||||||||||||| ||||| Sbjct 118 CTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTACTCACC 59 Query 27028 AGCGATTTCCGCCAGCTTGCCGAAGAT-GACAACGCGGTGCCATTCCGTCTGCTC 27081 |||||| || |||| ||||||||| || |||| | ||||||||||| || | ||| Sbjct 58 AGCGATCTCTGCCACCTTGCCGAACATCGACA-CACGGTGCCATTCGGTTTTCTC 5 >seq138243 Length=1642 Score = 82.4 bits (90), Expect = 2e-11 Identities = 186/277 (67%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 26922 CGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTCGCA 26981 || |||| || |||| |||||| || | ||| | || || || | || ||||| ||| Sbjct 137 CGATGATGTCGGTGGCGTAGCGTTCGATGCCGTCCTTGTCGGTGTACTTGCGGGTCTGCA 196 Query 26982 GACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCA 27041 | | |||||| | | | ||| | ||||| |||||| | || ||||||| || | Sbjct 197 GGCGGCCTTCGACGTAGACCGAGGAACCTTTCTTCAGGTACTGGCCGACGATTTCAGCGA 256 Query 27042 GCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTTCGCCTGTGGCCT 27101 | |||||||| | | |||||||||||| ||| | ||||| | ||||| ||| Sbjct 257 GACGGCCGAAGAAGGAGATGCGGTGCCATTCGGTCAGTTCTTTCTGCTCGCCGGTGTTGC 316 Query 27102 TATCTTTCCACTTTTCGGTTGTGG-CAATGCTGAGATTGGCAACTGCGCCACCTGACGGC 27160 || || | || | | |||| || ||| || ||||| | ||| | || |||| Sbjct 317 GGTCCTTGGATTTGTACGAGGTGGCCACTGC-GATGTTGGCGATGGCGTCGCCGCTCGGC 375 Query 27161 ATGTAGCGCACTTCTGGATCGTTGCCTAAATTACCGA 27197 |||||||| | ||| |||||| ||| | || |||| Sbjct 376 ATGTAGCGGATTTCCGGATCGCGGCCGAGGTTGCCGA 412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130709145232560