Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq18005 215 2e-51 >seq18005 Length=1826 Score = 215 bits (238), Expect = 2e-51 Identities = 316/445 (71%), Gaps = 4/445 (1%) Strand=Plus/Minus Query 30980 CCCTGCTGGCAGATGCCACGGGATTCCATGCACATGTGTCGCGCCTTAATGACCACACCG 31039 ||| || || |||||| ||| ||||||||||||||| || ||| |||||||| ||| Sbjct 496 CCCGGCGTGCGGATGCCGCGGCTTTCCATGCACATGTGGCGGCACTTGATGACCACGCCG 437 Query 31040 ACGCCCTTGGCTTCCAGGTGCTCGAACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCC 31099 ||| |||| | |||||| || | ||| | | ||||||||| | || || || ||| Sbjct 436 ACGGCCTTCGGTTCCAGCACTTCCATCAGCGTATTGGCGATCTGGACCGTCAGGCGCTCC 377 Query 31100 TGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACG 31159 ||||| |||||||| || ||| ||| ||||||||| |||||| |||||| ||| Sbjct 376 TGCACCTGCAGGCGCTTGGCGAACACGTCGACCAGGCGGGTCAGCTTCGACAGGCCGACG 317 Query 31160 ATACGACCGTTCGGAATGTAGCTGATCGTGACCGTGCCGAAGATCGGCGCGAGGTGATGC 31219 || || || || | |||| || ||| || ||||||||| |||||| ||||| || Sbjct 316 ATTTTTCCATTTGGCAAATAGCCGACGGTGGCCTTGCCGAAGAACGGCGCCAGGTGGTGT 257 Query 31220 TCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCATCTGGTCATGCTTCTCCGCA 31279 |||||||| ||||| |||||| |||||||| | || || || | | ||| || Sbjct 256 TCGCAATGGCTGTAGACCGGGATGCCGCGCACCACGATCAGCTCGTTGTATTCCTCGGCG 197 Query 31280 CCGTCTTCGAACACCTTCAGGATGGCCTTCGGATCCTTGCCGTAACCGCCGCACCAGTGG 31339 || |||||||| |||| ||||| | ||| |||| |||| ||| |||||| Sbjct 196 CCATCTTCGAAGGCCTTGAGGATCTCGACCGGGTCCTGCTCGTAGCCGGAAGTCCAGTGC 137 Query 31340 CGCCAGGCCTTAGCGACGCGATGCGGAGTCTCGAGCAGACCTTCCCGGGCAGGATCGTCC 31399 ||||||||| |||||||| ||| |||||| |||| || || ||||| || Sbjct 136 TTCCAGGCCTTGGCGACGCGCGCCGGGGTCTCGTGCAGGCCGGGACGATTGGGATCTTCG 77 Query 31400 CCGACGTACTGG--AGCAGACGGCG 31422 |||| | |||| ||||| ||||| Sbjct 76 CCGAGG--CTGGCCAGCAGGCGGCG 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 182668215190336