Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq980070 298 3e-76 seq52972 105 4e-18 >seq980070 Length=1613 Score = 298 bits (330), Expect = 3e-76 Identities = 529/753 (70%), Gaps = 35/753 (5%) Strand=Plus/Minus Query 836 GATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACC 895 ||||||||||| |||||||||| | ||||||| |||| |||| | | |||| Sbjct 939 GATCGCACCGGTACCGGCACGCGTTCCGTGTTCGGCTACCAGATGCGCTTCAACCTGCAG 880 Query 896 GAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTT 955 || |||||||||||||| || || ||| || ||| | || ||| | | ||||| Sbjct 879 GACGGCTTCCCGCTGGTGACGACCAAGAAGGTGCACCTGAAGTCGATCATCCATGAACTC 820 Query 956 CTGTGGTTCCTCAGTGG--CGAC-ACGAACGTGAAGGCGCTCAACGACAACGGCGTCACC 1012 | |||||||| | || |||| | | || | || || || ||||||||| | Sbjct 819 ATCTGGTTCCTGAACGGTTCGACCAATATCGCCTAC---CTGAAGGAAAACGGCGTCTCG 763 Query 1013 ATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGG 1072 |||||||||||||||||||||| ||| ||||| || || |||||||| |||||| Sbjct 762 ATCTGGGACGAGTGGGCCGACGAGAACGGCAACCTGGGCCCGATCTACGGCTACCAGTGG 703 Query 1073 CGGCACTGGCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCCG-T 1131 || ||||| | | |||||| | | || |||||| || | | | | | Sbjct 702 CGCAGCTGGCCGGCCCCGGACGGCCG------GCACATCGACCAGGTCA-GCCAGGTGCT 650 Query 1132 GGAGCTGCTTCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGG 1191 ||| | | | | | | || ||||||||||| | || ||||| |||||||| | Sbjct 649 GGACCAGATCAGGAACAATCCGGACTCGCGCCGCCTGATCGTCTCCGCCTGGAACGTGGC 590 Query 1192 TGACCT-CAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCG 1250 ||| | | || | ||| || | || |||||| | | |||||| | ||||| | || Sbjct 589 CGACGTGCCGC-AGATGAAGCTGCCGCCCTGCCACGCCTTCTTCCAGTTCTACGTGGCCG 531 Query 1251 ACGGCCGGCTCTCGCTGC-AGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCG 1309 ||||| ||| || |||| || |||||||||||||||| ||||| |||||||| ||||| Sbjct 530 ACGGCAAGCTGTC-CTGCCAGCTCTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCC 472 Query 1310 TTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGG 1369 ||||||||||| || ||||| || || | |||||| | || ||||||||||||||| Sbjct 471 TTCAATATCGCTTCCTACGCCCTGCTGACCCACATGATGGCCCAGCAGGCCGGCCTGGAA 412 Query 1370 GTGGGTGAGCTGATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACGTCGACCAG 1429 ||||| || | |||||||||||||||||||||||| | ||| |||||| | || ||| Sbjct 411 GTGGGCGACTTCATCTGGACCGGCGGCGACTGCCACCTGTACTCGAACCACATGGAACAG 352 Query 1430 GCGCTGATGCAGCTC-CGC-CGACGACCGCGGCC-CTACCCGAGGCTCGTGCTACACCAC 1486 | | |||||||| ||| ||| || ||| || || ||| ||||| || || || Sbjct 351 GTCGAGCTGCAGCTCGCGCGCGAAGA--GCGTCCGCTGCCC-AGGCTGGT----CATCAA 299 Query 1487 GCG-----CCG--TCGATCTTCGACTACCGGTACGAGCACATCCACCTCGTGAACTACGA 1539 ||| ||| ||| | ||||||||| ||| ||| || || | | || |||||| Sbjct 298 GCGCAAGCCCGATTCGCTGTTCGACTACAGGTTCGACGACTTCGAGATGGTCGGCTACGA 239 Query 1540 CCCGCACCCGTCGATCAAGGCGCCGGTGGCCGT 1572 ||||| || |||||||||| |||||||| || Sbjct 238 TCCGCATCCCGCGATCAAGGCCCCGGTGGCTGT 206 >seq52972 Length=254 Score = 105 bits (116), Expect = 4e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 1149 ACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGGTGACCTCA-GCGACATG 1207 |||| || ||||||||| | || || || ||||| || | ||| || ||| |||| Sbjct 206 ACCCCGATTCGCGCCGGCTGATCGTGTCTGCCTGGAATGTGGCCGACATCCCGCG-CATG 148 Query 1208 GCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTG 1267 || | || ||||| | |||||| | || || | ||||||| ||| ||| Sbjct 147 AAGCTGCCGCCCTGCCATGCGTTCTTCCAGTTCTATGTGGCCGACGGCAAGCTGTCGTGC 88 Query 1268 CAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTAC 1327 ||| |||||||||||||||| | || |||||||| |||| |||||| || ||| ||| Sbjct 87 CAGCTCTACCAGCGCAGCGCCCATATCTTCCTCGGCGTGCGGTTCAAGATTGCCAGCTAC 28 Query 1328 GCGCTCCTCGCGCACATGTTCGCGCAG 1354 ||||| |||| ||||||| | |||||| Sbjct 27 GCGCTTCTCGTGCACATGGTTGCGCAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 288631849578801