Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_031077.1 Length=41760 Score E Sequences producing significant alignments: (Bits) Value seq18201 385 1e-102 >seq18201 Length=11482 Score = 385 bits (426), Expect = 1e-102 Identities = 510/696 (73%), Gaps = 15/696 (2%) Strand=Plus/Plus Query 820 CACCGGACCACGCAAGTGGCAGGCTGATGCATTCCG--CGAGATACGTGATCACCTCCAG 877 |||||| |||||| ||||||| || ||| | | || ||| | || ||||| ||| Sbjct 143 CACCGGGCCACGCGCCTGGCAGGTCGA--CATCCTGAACGTGATCGGCGACCACCTGCAG 200 Query 878 AATCCTGCTACCCGTCACCAGCCGCTGATGCTGGCCCGAGCATCCGGACACGGTATCGGT 937 || | ||| |||||||||| | ||| || |||| ||||||||||| Sbjct 201 GGGCCG---AACCGCTTCCAGCCGCTGCGCATCGCCGTCGCGGCCGGTCACGGTATCGGC 257 Query 938 AAATCAGCGTTTATCTCGATGCTGATCAACTGGGGCATGTCCACCTGCGAGGACTGCAAG 997 || || ||| | ||| ||||| | | |||||| ||| |||||||||||||||| Sbjct 258 AAGTCCGCGCTGATCGGCATGCTCACCGGCTGGGGGATGGACACCTGCGAGGACTGCCGC 317 Query 998 GTAGTGGTCACCGCGAACACCGACAATCAGTTGCGTACAAAAACATGGCCTGAAATCATC 1057 | ||||| ||||| |||||||| ||| |||| || || || ||||| |||||| Sbjct 318 ATCGTGGTGACCGCCAACACCGAGGGCCAGCTGCGCACGAAGACCTGGCCGGAAATCTCG 377 Query 1058 AAGTGGTCGAACCTTGCTATCACGAAAGAGTGGTTTACC-TGCACCGCCACAGCGATGTA 1116 |||||| | ||| | ||||| | | |||| | | ||| | |||| |||| || Sbjct 378 AAGTGGCGGCGCCTGACCATCACCGAGCACTGGTGGAACGTGC-CGGCCATGTCGATCTA 436 Query 1117 CAGCAACGATCCGGGACACGATAAACGCTGGCGCGCTGACGCTATTCCATGGTCTGAGCA 1176 | ||||| || || | ||| || |||||||||| ||||| | || ||| ||||| Sbjct 437 CTCGAACGAGCCAGGCCGCGAGAAGAGCTGGCGCGCCGACGCCACGCCCTGGAGCGAGCA 496 Query 1177 CAACACTGAAGCATTCGCCGGGCTGCACAACGAGCGCAAGCGCATCATCGTGGTATTCGA 1236 |||||| || || |||||||| ||||||||| || |||||||||||||||| | | ||| Sbjct 497 CAACACCGAGGCGTTCGCCGGCCTGCACAACAAGGGCAAGCGCATCATCGTCATCTACGA 556 Query 1237 CGAAGCCTCAAACATTGCCGATCTGGTGTGGGAGGTTGCCGAGGGTGCGCTGACGGACGA 1296 ||| ||||| || || ||||| ||| ||||| || |||| || || || || ||||| Sbjct 557 CGAGGCCTCGAAGATCGCCGACAAGGTCTGGGAAGTCACCGACGGCGCACTTACCGACGA 616 Query 1297 GGACACCGAAATCATCTGGGTGGCGTTCGGTAACCCGACGCGTAACACCGGGCGTTTCCG 1356 ||||||||||||||||||| | || ||||| |||||||||| ||| || || ||||| Sbjct 617 GGACACCGAAATCATCTGGATCGCCTTCGGGAACCCGACGCAGTCCACAGGCCGCTTCCG 676 Query 1357 CGAGTGCTTCCGCAAATACCGGCATCGCTGGAAGTG-CGCG-CAGATTGACAGCCGCACC 1414 ||||||||||||| ||||| || | |||| ||| |||| || || |||||||||||| Sbjct 677 CGAGTGCTTCCGCCGGTACCGCCACCTCTGG--GTGACGCGCCACATCGACAGCCGCACC 734 Query 1415 GTTGAGGGCACCAACAAAGAGCAACTGCAAAAGTGGGTGGACGAC-TACGGCGAAGACAG 1473 || |||||||| ||||| || | ||| | ||| |||| |||| ||||||| ||||| Sbjct 735 GTCGAGGGCACGAACAAGCAGTACCTGGACGAGTTCGTGG-CGACGCACGGCGAGGACAG 793 Query 1474 CGACTTCGTGAAGGTGCGTGTACGCGGCATCTTCCC 1509 |||| |||| ||||| || || |||||| | ||||| Sbjct 794 CGACATCGTCAAGGTCCGCGTGCGCGGCCTGTTCCC 829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130216020950164