Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq2072170 223 9e-54 seq71020 98.7 3e-16 seq1973634 82.4 2e-11 >seq2072170 Length=265 Score = 223 bits (246), Expect = 9e-54 Identities = 176/211 (83%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 10292 GAGAGCTTCGTTAAGACAATCAAGCGCGACTACGTGGCGCACATGCCCAAGCCGGATCGA 10351 ||||||||||| ||||| |||||||| || || || |||||||||| ||| ||||||||| Sbjct 211 GAGAGCTTCGTCAAGACGATCAAGCGTGATTATGTCGCGCACATGCTCAAACCGGATCGA 152 Query 10352 GAGACAGCCTTGCGCAACCTGACGATTGCCTTCGAGCATTACAACGAGCAGCATCCGCAC 10411 || |||| ||| ||| |||||| ||||| | ||| |||||||||||||||||||| | Sbjct 151 GATGCAGCGCTGCTCAATCTGACGCTTGCCATATAGCCTTACAACGAGCAGCATCCGCGC 92 Query 10412 AGCGCCTTGAAATACCGCTCGCCGAGGGAATTCAGGCGCTTGGCAGCAGCATCAATTTAA 10471 || || |||||||| |||| |||||| || | || || |||||| |||||||||||||| Sbjct 91 AGTGCTTTGAAATATCGCTTGCCGAGAGATCTTAGACGTTTGGCAACAGCATCAATTTAA 32 Query 10472 CGGGGAGTTGGTGTCCGGTTTGGTAGGGGCA 10502 |||||||||| |||||||||| ||||||| Sbjct 31 AAGGGAGTTGGTATCCGGTTTGGGAGGGGCA 1 >seq71020 Length=4149 Score = 98.7 bits (108), Expect = 3e-16 Identities = 263/393 (67%), Gaps = 18/393 (5%) Strand=Plus/Plus Query 9292 AGGAGCGGCGGCGCCGCTGG--AGCCCAGAGCAAAAGCTGGCGATGGTTCGCGAGAGCCT 9349 ||||||| || ||||||||| || ||| | ||| |||| || |||| || | Sbjct 2967 AGGAGCGACGCCGCCGCTGGTCAGTGCAG-GAAAAGGCTG-CGCTGGTCAAGGAAACGTA 3024 Query 9350 TGAGCCAGGACACAGCGTTTCGGTGGTGGCCCGGCGCAACGGCGTCAATGCCAATCAACT 9409 ||||| || ||||| ||| |||||||||| ||||| ||| || | || || Sbjct 3025 CGAGCCGGGCATGAGCGTATCGTTGGTGGCCCGCAAGCACGGCATCAGCGCAAGCCAGCT 3084 Query 9410 ATTTCACTGGCGCAAGCTTTACCAGGACGGAAGTTTGTCGGCGGTCAGCGCCGGTGAAGC 9469 || |||||||||| || | | || || || ||||| |||||||| | Sbjct 3085 GTTCAACTGGCGCAAACTCGAGCGCGAAGGCGCCCTGGTCGCGGTGCATTCCGGTGAATC 3144 Query 9470 CGTGGTGCCTGCGTCCGAGTTG--AGCGATGCGCTCAGGCAGATTCGTGAGCTACAACGG 9527 || || || ||| ||| || |||| ||| | ||||| | ||||| || Sbjct 3145 GGTTGTACCGGCGAGCGAACTGGCAGCGGCACGCGCC--CAGATCGCACAACTACAGCGC 3202 Query 9528 ATGCTGGGCAAGAAGACGATGGAAGCCGAAGTCCTCAAAGAGGCCGTGGAGATAGCCCGC 9587 |||||||| ||||| ||||||||||| || |||| || || || | ||| || Sbjct 3203 ATGCTGGGTAAGAAAACGATGGAAGCGGAGATCCTGCGCGAAGCGGTCG----AGCTGGC 3258 Query 9588 TCGCGAAAA----TGGATTGCGCACTCACCCTTGTTGCCGGGGGACGGTCAGTGAAACTG 9643 ||||||||| |||||||||| ||||||||| ||| |||||| |||| || | Sbjct 3259 TCGCGAAAAAAAGTGGATTGCGCGCTCACCCTTATTGGACAAGGACGGGCAGTAAAGCCT 3318 Query 9644 GTCAGTGAATGT-CTCGGTGTGGCGCGCTCGCA 9675 ||| | | ||| || ||||| ||||||||||| Sbjct 3319 GTCTGCG-TTGTCCTTGGTGTAGCGCGCTCGCA 3350 >seq1973634 Length=243 Score = 82.4 bits (90), Expect = 2e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 10153 ACTGCCGACCACACCGGTGCAATGGCTAAGCGATAACGGTTCGGCCTACATCGCTGAACA 10212 ||| |||| |||||||||||||| | | || |||||||| | |||||| | ||| || | Sbjct 107 ACTACCGAGCACACCGGTGCAATTGTTGAGTGATAACGGCTTGGCCTATACCGCCGAGTA 166 Query 10213 GACGCGCCTGTTTGCTCGACAGATTGGCCTACAGCCAGTGACCACGCCGGTACGCAGCCC 10272 | || | |||||||| ||||| || | ||||| | |||| | ||| |||| || Sbjct 167 GGGACGGATCTTTGCTCGCCAGATCTGCTTGCAGCCGATAGCCACACAGGTGTGCAGTCC 226 Query 10273 GCAGAGCAACGGCAT 10287 |||| |||||| || Sbjct 227 GCAGTACAACGGAAT 241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134950638269118